Clusters of Characterized Proteins

Clustering the characterized proteins for natA (L-valine ABC transporter, ATPase component 1 (NatA)) in L-valine catabolism

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Definition of natA

• Ignore hits to Q55164 when looking for 'other' hits (NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE)
• Curated sequence Q7A2H0: NatA, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)
• Comment: Synechocystis sp. NatABCDE TC 3.A.1.4.2) and a similar system from Anabaena (also known as N-I; TC 3.A.1.4.6) are reported to transport many amino acids. There isn't any data for valine transport in Synechocystis, but N-I from Anabaena is thought to contribute to the reuptake of valine that leaks from the cell (PMC4500139).

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (1/1 heteromeric)

TC 3.A.1.4.6 / Q7A2H0 NatA, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB)
PFams: ABC_tran, BCA_ABC_TP_C
Heteromeric, 260 amino acids: PaperBLAST, CDD