Clusters of Characterized Proteins

Clustering the characterized proteins for kdaD (2-keto-3-deoxy-D-arabinonate dehydratase) in D-xylose catabolism

Or see other characterized proteins similar to kdaD

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of kdaD

• Curated proteins or TIGRFams with EC 4.2.1.141
• Comment: Watanabe et al (PMC6336799) show that C785_RS13680 = WP_039786859.1 = UPI00041852D2 is DKDP dehydratase (kdaD). Is 98% identical to HSERO_RS19360, which is included via reannotations.

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 376-391 amino acids (not heteromeric)

CCNA_00866 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) from Caulobacter crescentus NA1000
A0A0H3C4T2 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Caulobacter vibrioides (strain NA1000 / CB15N)
384 amino acids: PaperBLAST, CDD, Compare to cluster

HSERO_RS19360 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae SmR1
PFams: FAA_hydrolase
391 amino acids: PaperBLAST, CDD, Compare to cluster

Ga0059261_1895 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Sphingomonas koreensis DSMZ 15582
PFams: FAA_hydrolase
376 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 289-298 amino acids (not heteromeric)

Q4J7I6 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Sulfolobus acidocaldarius
PFams: FAA_hydrolase
292 amino acids: PaperBLAST, CDD, Compare to cluster

Q97UA0 2-keto-3-deoxy-D-arabinonate dehydratase subunit (EC 4.2.1.141) from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
KDAD_SACS2 / Q97UA0 2-dehydro-3-deoxy-D-arabinonate dehydratase; 2-keto-3-deoxy-D-arabinonate dehydratase; KdaD; EC 4.2.1.141 from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus)
Q97UA0 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Saccharolobus solfataricus
PFams: FAA_hydrolase
298 amino acids: PaperBLAST, CDD, Compare to cluster

D4GP28 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
KDXD_HALVD / D4GP28 Probable 2-keto-3-deoxyxylonate dehydratase; KDXD; EC 4.2.1.141 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
PFams: FAA_hydrolase
289 amino acids: PaperBLAST, CDD, Compare to cluster