Clusters of Characterized Proteins

Clustering the characterized proteins for xylF_Tm (ABC transporter for xylose, permease component xylF) in D-xylose catabolism

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Definition of xylF_Tm

• Curated sequence Q9WXW7: ABC-type transporter, integral membrane subunit, component of Xylose porter (Nanavati et al. 2006). Regulated by xylose-responsive regulator XylR
• Comment: TC 3.A.1.2.18 describes another ABC transporter for xylose in T. maritima: Q9WXW7 = TM0112 = XylF, the permease subunit; Q9WXW9 = TM0114 = XylE, the SBP, reported high affinity for xylose (PMC1392961); Q9WXX0 = TM0115 = xylK is the ATPase-binding component. Also TM0113 is a putative xylanase. (Only the SBP seems to be characterized but the clustering of these genes with each other and other xylose-related genes is quite suggestive.) TC 3.A.1.2.18 also includes Q9WXW0 = TM0105, for which TCDB cites Nanavati et al (PMC1392961), but that paper does not mention this gene. Probably a curation error.

Fetched 1 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 0 of these sequences

Found 0 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Singletons (1/1 heteromeric)

TC 3.A.1.2.18 / Q9WXW7 ABC-type transporter, integral membrane subunit, component of Xylose porter (Nanavati et al. 2006). Regulated by xylose-responsive regulator XylR from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: BPD_transp_2
Heteromeric, 317 amino acids: PaperBLAST, CDD