GapMind for catabolism of small carbon sources

 

Clusters of Characterized Proteins

Clustering the characterized proteins for xyrA (xylitol reductase) in D-xylose catabolism

Or see other characterized proteins similar to xyrA

Or see all steps for D-xylose catabolism

Or cluster curated proteins matching a keyword

Definition of xyrA

Fetched 15 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 14 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 318-329 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A0H3Y829 D-xylose reductase (EC 1.1.1.307) from Kluyveromyces marxianus
PFams: Aldo_ket_red
329 amino acids: PaperBLAST, CDD, Compare to cluster

A0MTG4 D-xylose reductase (EC 1.1.1.307) from Scheffersomyces shehatae
PFams: Aldo_ket_red
323 amino acids: PaperBLAST, CDD, Compare to cluster

A9QVV8 D-xylose reductase (EC 1.1.1.307) from Candida tropicalis
PFams: Aldo_ket_red
324 amino acids: PaperBLAST, CDD, Compare to cluster

C1K8Y9 D-xylose reductase (EC 1.1.1.307) from Candida tropicalis
PFams: Aldo_ket_red
324 amino acids: PaperBLAST, CDD, Compare to cluster

C5J3R6 D-xylose reductase (EC 1.1.1.307) from Rasamsonia emersonii
PFams: Aldo_ket_red
320 amino acids: PaperBLAST, CDD, Compare to cluster

I7HD84 D-xylose reductase (EC 1.1.1.307) from Rhizomucor pusillus
PFams: Aldo_ket_red
322 amino acids: PaperBLAST, CDD, Compare to cluster

M9RYL7 D-xylose reductase (EC 1.1.1.307) from Kazachstania humilis
PFams: Aldo_ket_red
326 amino acids: PaperBLAST, CDD, Compare to cluster

XYL1_CANTE / O74237 NAD(P)H-dependent D-xylose reductase; XR; EC 1.1.1.307 from Candida tenuis (Yeast) (Yamadazyma tenuis)
O74237 D-xylose reductase (EC 1.1.1.307) from Candida tenuis
PFams: Aldo_ket_red
322 amino acids: PaperBLAST, CDD, Compare to cluster

P31867 NAD(P)H-dependent D-xylose reductase (EC 1.1.1.307) from Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
XYL1_PICST / P31867 NAD(P)H-dependent D-xylose reductase; XR; EC 1.1.1.307 from Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545) (Yeast) (Pichia stipitis)
P31867 D-xylose reductase (EC 1.1.1.307) from Scheffersomyces stipitis
PFams: Aldo_ket_red
318 amino acids: PaperBLAST, CDD, Compare to cluster

Q6Y0Z3 D-xylose reductase (EC 1.1.1.307) from Candida parapsilosis
PFams: Aldo_ket_red
324 amino acids: PaperBLAST, CDD, Compare to cluster

XYL1_MAGO7 / G4N708 NAD(P)H-dependent D-xylose reductase XYR1; XR; EC 1.1.1.307 from Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (Rice blast fungus) (Pyricularia oryzae)
PFams: Aldo_ket_red
324 amino acids: PaperBLAST, CDD, Compare to cluster

Q876L8 aldose reductase (EC 1.1.1.21; EC 1.1.1.307) from Hypocrea jecorina
XYL1_HYPJE / Q876L8 NAD(P)H-dependent D-xylose reductase xyl1; XR; EC 1.1.1.- from Hypocrea jecorina (Trichoderma reesei)
Q876L8 D-xylose reductase (EC 1.1.1.307) from Trichoderma reesei
PFams: Aldo_ket_red
324 amino acids: PaperBLAST, CDD, Compare to cluster

XYL1_CANBO / Q8X195 NADPH-dependent D-xylose reductase; XR; EC 1.1.1.307 from Candida boidinii (Yeast)
PFams: Aldo_ket_red
321 amino acids: PaperBLAST, CDD, Compare to cluster

A2Q8B5 D-xylose reductase (EC 1.1.1.307) from Aspergillus niger (strain CBS 513.88 / FGSC A1513)
XYL1_ASPNG / Q9P8R5 NAD(P)H-dependent D-xylose reductase xyl1; XR; EC 1.1.1.307 from Aspergillus niger
Q9P8R5 D-xylose reductase (EC 1.1.1.307) from Aspergillus niger
PFams: Aldo_ket_red
319 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

F2YCN5 D-xylose reductase (EC 1.1.1.307) from Zymomonas mobilis subsp. mobilis
PFams: Aldo_ket_red
340 amino acids: PaperBLAST, CDD