PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.1.1.122 as complete word(s)

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Found 4 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 329-346 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

FCDH_PSESP / Q52472 D-threo-aldose 1-dehydrogenase; L-fucose dehydrogenase; EC 1.1.1.122 from Pseudomonas sp.
PFams: Aldo_ket_red
329 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS34225 L-fucose dehydrogenase (EC 1.1.1.122) from Burkholderia phytofirmans PsJN
PFams: Aldo_ket_red
346 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q97YM2 D-arabinose 1-dehydrogenase subunit from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)
Q97YM2 D-threo-aldose 1-dehydrogenase (EC 1.1.1.122) from Saccharolobus solfataricus
PFams: ADH_N, ADH_zinc_N, ADH_zinc_N_2
349 amino acids: PaperBLAST, CDD

SM_b21109 L-fucose dehydrogenase (EC 1.1.1.122) from Sinorhizobium meliloti 1021
PFams: GFO_IDH_MocA
360 amino acids: PaperBLAST, CDD