PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.1.1.282 as complete word(s)

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Found 7 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 273-288 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b1692 quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli K-12 substr. MG1655
P0A6D5 quinate/shikimate dehydrogenase (EC 1.1.1.282) from Escherichia coli (strain K12)
YDIB_ECOLI / P0A6D5 Quinate/shikimate dehydrogenase; NAD-dependent shikimate 5-dehydrogenase; EC 1.1.1.282 from Escherichia coli (strain K12)
RF|NP_416207 quinate/shikimate dehydrogenase; EC 1.1.1.282 from Escherichia coli K12
PFams: Shikimate_dh_N, SDH_C
288 amino acids: PaperBLAST, CDD, Compare to cluster

Q88GF6 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida
PFams: Shikimate_dh_N
273 amino acids: PaperBLAST, CDD, Compare to cluster

Q88K85 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida
PFams: Shikimate_dh_N
282 amino acids: PaperBLAST, CDD, Compare to cluster

Q9X5C9 quinate/shikimate dehydrogenase monomer (EC 1.1.1.24) from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
AROE_CORGL / Q9X5C9 Quinate/shikimate dehydrogenase (NAD(+)); QSDH; EC 1.1.1.-; EC 1.1.1.24 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
Q9X5C9 quinate dehydrogenase (EC 1.1.1.24); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum
PFams: Shikimate_dh_N, SDH_C
283 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_CORGB / A4QB65 Quinate/shikimate dehydrogenase (NAD(+)); QSDH; EC 1.1.1.-; EC 1.1.1.24 from Corynebacterium glutamicum (strain R)
A4QB65 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum
PFams: Shikimate_dh_N, SDH_C
283 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q88JP1 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida
PFams: Shikimate_dh_N
269 amino acids: PaperBLAST, CDD
(similar to BRENDA::Q9X5C9 from Cluster 1, but similarity to seed sequence is below thresholds)

P25415 quinate dehydrogenase (EC 1.1.1.282) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
CH_122204 quinate dehydrogenase; EC 1.1.1.24 from Emericella nidulans
PFams: Shikimate_dh_N
329 amino acids: PaperBLAST, CDD