PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.1.1.46 as complete word(s)

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Found 10 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 256-280 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

HSERO_RS05210 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae SmR1
PFams: adh_short, Epimerase, adh_short_C2
261 amino acids: PaperBLAST, CDD, Compare to cluster

Shewana3_2071 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp. ANA-3
PFams: adh_short, KR, adh_short_C2
256 amino acids: PaperBLAST, CDD, Compare to cluster

BPHYT_RS16920 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans PsJN
PFams: KR, adh_short, Epimerase, adh_short_C2
266 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_614 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Acidovorax sp. GW101-3H11
PFams: adh_short, adh_short_C2
280 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_2119 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens GW456-L13
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_412 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N1B4
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_20240 L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens FW300-N2C3
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_5967 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens FW300-N2E2
PFams: adh_short, KR, adh_short_C2
272 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

ARADH_HALVD / D4GP33 L-arabinose 1-dehydrogenase (NAD(P)(+)); L-AraDH; EC 1.1.1.376 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
D4GP33 L-arabinose 1-dehydrogenase [NAD(P)+] (EC 1.1.1.376); L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Haloferax volcanii
PFams: RmlD_sub_bind, Epimerase, 3Beta_HSD, GDP_Man_Dehyd, NAD_binding_10, Polysacc_synt_2, NAD_binding_4
254 amino acids: PaperBLAST, CDD

SMc00588 L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti 1021
PFams: GFO_IDH_MocA
308 amino acids: PaperBLAST, CDD