PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.1.1.6 as complete word(s)

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Found 12 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 364-450 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A1D3TV18 glycerol dehydrogenase (EC 1.1.1.6) from Anaerobium acetethylicum
PFams: Fe-ADH, Fe-ADH_2
379 amino acids: PaperBLAST, CDD, Compare to cluster

A0MLR7 glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae
PFams: Fe-ADH, Fe-ADH_2
380 amino acids: PaperBLAST, CDD, Compare to cluster

B2ZPN8 glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae
PFams: Fe-ADH, Fe-ADH_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

GLD1_SCHPO / O13702 Glycerol dehydrogenase 1; GDH; GLDH; EC 1.1.1.6 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
O13702 glycerol dehydrogenase (EC 1.1.1.6) from Schizosaccharomyces pombe
RF|NP_593651.1 mitochondrial glycerol dehydrogenase Gld1 from Schizosaccharomyces pombe
PFams: Fe-ADH, Fe-ADH_2, DHQ_synthase
450 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZKM9 glycerol dehydrogenase (EC 1.1.1.6) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Fe-ADH, Fe-ADH_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WYQ4 glycerol dehydrogenase (EC 1.1.1.6) from Thermotoga maritima
PFams: Fe-ADH, Fe-ADH_2, DHQ_synthase
364 amino acids: PaperBLAST, CDD, Compare to cluster

GB|AAC44426.1 glycerol dehydrogenase; EC 1.1.1.6 from Pseudomonas putida
PFams: Fe-ADH, Fe-ADH_2
365 amino acids: PaperBLAST, CDD, Compare to cluster

b3945 L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli K-12 substr. MG1655
P0A9S5 L-1,2-propanediol dehydrogenase / glycerol dehydrogenase (EC 1.1.1.75; EC 1.1.1.6) from Escherichia coli (strain K12)
GLDA_ECOLI / P0A9S5 Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Escherichia coli (strain K12)
RF|NP_418380 glycerol dehydrogenase; EC 1.1.1.6 from Escherichia coli K12
PFams: Fe-ADH, Fe-ADH_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

GB|AAB48844.1 glycerol dehydrogenase; EC 1.1.1.6 from Citrobacter freundii
PFams: Fe-ADH, Fe-ADH_2
365 amino acids: PaperBLAST, CDD, Compare to cluster

GLDA_GEOSE / P32816 Glycerol dehydrogenase; GDH; GLDH; GlyDH; EC 1.1.1.6 from Geobacillus stearothermophilus (Bacillus stearothermophilus)
GI|142978 glycerol dehydrogenase; EC 1.1.1.6 from Geobacillus stearothermophilus
PFams: Fe-ADH, Fe-ADH_2
370 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

ADH1_GEOTN / A4IP64 Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans (strain NG80-2)
A4IP64 alcohol dehydrogenase (EC 1.1.1.1); long-chain-alcohol dehydrogenase (EC 1.1.1.192) from Geobacillus thermodenitrificans
PFams: Fe-ADH, Fe-ADH_2
395 amino acids: PaperBLAST, CDD

GOLD_LISIN / Q92EU6 NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
PFams: adh_short, Epimerase, KR, adh_short_C2
254 amino acids: PaperBLAST, CDD