PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.1.3.2

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Found 15 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 15 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 13 of these sequences

Found 4 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 365-403 amino acids (not heteromeric)

A9QH69 (S)-2-hydroxy-acid oxidase (EC 1.1.3.15); L-lactate oxidase (EC 1.1.3.2) from Streptococcus iniae
PFams: FMN_dh
390 amino acids: PaperBLAST, CDD, Compare to cluster

D4YFM2 lactate oxidase monomer (EC 1.1.3.2) from Aerococcus viridans ATCC 11563
D4YFM2 L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans
PFams: FMN_dh
374 amino acids: PaperBLAST, CDD, Compare to cluster

F8WQN2 L-lactate oxidase (EC 1.1.3.2) from Chlamydomonas reinhardtii
PFams: FMN_dh, IMPDH
384 amino acids: PaperBLAST, CDD, Compare to cluster

Q44467 L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans
PFams: FMN_dh
374 amino acids: PaperBLAST, CDD, Compare to cluster

Q8Z0C8 L-lactate oxidase (EC 1.1.3.2) from Nostoc sp. PCC 7120
PFams: FMN_dh
365 amino acids: PaperBLAST, CDD, Compare to cluster

LA2M_STRIN / O33655 Lactate 2-monooxygenase; Lactate oxidase; EC 1.13.12.4 from Streptococcus iniae (Streptococcus shiloi)
O33655 L-lactate oxidase (EC 1.1.3.2) from Streptococcus iniae
PFams: FMN_dh
403 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 681-698 amino acids (not heteromeric)

A0A024FB95 long-chain-alcohol oxidase (EC 1.1.3.20) from Starmerella bombicola
PFams: FAD_binding_2, GMC_oxred_N, NAD_binding_8, GMC_oxred_C
681 amino acids: PaperBLAST, CDD, Compare to cluster

Q9P8D8 long-chain fatty alcohol oxidase (EC 1.1.3.20) from Candida cloacae
PFams: GMC_oxred_N, GMC_oxred_C
698 amino acids: PaperBLAST, CDD, Compare to cluster

Q9P8D7 long-chain fatty alcohol oxidase (EC 1.1.3.20) from Candida cloacae
PFams: GMC_oxred_N, GMC_oxred_C
698 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 609-609 amino acids (not heteromeric)

Q833L7 glycerol-3-phosphate oxidase (EC 1.1.3.21) from Enterococcus faecalis
PFams: DAO, DAO_C
609 amino acids: PaperBLAST, CDD, Compare to cluster

GLPO_ENTCA / O86963 Alpha-glycerophosphate oxidase; Glycerol-3-phosphate oxidase; EC 1.1.3.21 from Enterococcus casseliflavus (Enterococcus flavescens)
PFams: FAD_binding_3, DAO, DAO_C
609 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 746-749 amino acids (not heteromeric)

Q9LW56 long-chain-alcohol oxidase (EC 1.1.3.20) from Arabidopsis thaliana
FAO3_ARATH / Q9LW56 Long-chain-alcohol oxidase FAO3; Long-chain fatty alcohol oxidase 3; EC 1.1.3.20 from Arabidopsis thaliana (Mouse-ear cress)
PFams: FAD_binding_2, GMC_oxred_N, GMC_oxred_C
746 amino acids: PaperBLAST, CDD, Compare to cluster

FAO1_LOTJA / B5WWZ8 Long-chain-alcohol oxidase FAO1; Long-chain fatty alcohol oxidase 1; EC 1.1.3.20 from Lotus japonicus (Lotus corniculatus var. japonicus)
PFams: GMC_oxred_N, GMC_oxred_C
749 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q6CEP8 long-chain-alcohol oxidase (EC 1.1.3.20) from Yarrowia lipolytica
PFams: GMC_oxred_N, GMC_oxred_C
609 amino acids: PaperBLAST, CDD

Q70GP9 glycerol-3-phosphate oxidase (EC 1.1.3.21) from Mycoplasma mycoides subsp. mycoides
CH_000554 glycerol-3-phosphate oxidase; EC 1.1.3.21 from Mycoplasma mycoides subsp. mycoides SC
PFams: DAO, NAD_binding_8
387 amino acids: PaperBLAST, CDD