PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.1.99.13 as complete word(s)

Or try another search

Found 14 characterized proteins with matching descriptions. 10 of these are heteromeric.

Fetched 14 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 4 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 559-579 amino acids (3/4 heteromeric)

A0A140CUL9 glucoside 3-dehydrogenase (EC 1.1.99.13) from Sphingobacterium faecium
PFams: GMC_oxred_N, GMC_oxred_C
562 amino acids: PaperBLAST, CDD, Compare to cluster

Q9A7T6 lactose 3-dehydrogenase flavin subunit (EC 1.1.99.13) from Caulobacter vibrioides (strain ATCC 19089 / CB15)
CCNA_01706 lacA: subunit of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Caulobacter crescentus NA1000
PFams: FAD_binding_2, GMC_oxred_N, GMC_oxred_C
Heteromeric, 579 amino acids: PaperBLAST, CDD, Compare to cluster

Echvi_1847 periplasmic glucoside 3-dehydrogenase (lacA subunit) (EC 1.1.99.13) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: FAD_binding_2, GMC_oxred_N, GMC_oxred_C
Heteromeric, 559 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS15345 periplasmic glucoside 3-dehydrogenase (lacA subunit) (EC 1.1.99.13) from Pedobacter sp. GW460-11-11-14-LB5
PFams: GMC_oxred_N, GMC_oxred_C
Heteromeric, 567 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 182-194 amino acids (heteromeric)

Echvi_1848 periplasmic glucoside 3-dehydrogenase (lacC subunit) (EC 1.1.99.13) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: Gluconate_2-dh3
Heteromeric, 183 amino acids: PaperBLAST, CDD, Compare to cluster

Q9A7T5 lactose 3-dehydrogenase γ subunit (EC 1.1.99.13) from Caulobacter vibrioides (strain ATCC 19089 / CB15)
CCNA_01707 lacC: subunit of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Caulobacter crescentus NA1000
PFams: Gluconate_2-dh3
Heteromeric, 182 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS15340 periplasmic glucoside 3-dehydrogenase (lacC subunit) (EC 1.1.99.13) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Gluconate_2-dh3
Heteromeric, 194 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 127-141 amino acids (heteromeric)

Echvi_1841 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Echinicola vietnamensis KMM 6221, DSM 17526
PFams: Cytochrom_C
Heteromeric, 141 amino acids: PaperBLAST, CDD, Compare to cluster

CA265_RS15360 predicted cytochrome c component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Pedobacter sp. GW460-11-11-14-LB5
PFams: Cytochrom_C
Heteromeric, 127 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 110-120 amino acids (heteromeric)

Q9A7T8 lactose 3-dehydrogenase cytochrome c subunit (EC 1.1.99.13) from Caulobacter vibrioides (strain ATCC 19089 / CB15)
PFams: Cytochrome_CBB3, Cytochrom_C
Heteromeric, 110 amino acids: PaperBLAST, CDD, Compare to cluster

CCNA_01704 lacB: cytochrome c2 component of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) from Caulobacter crescentus NA1000
PFams: Cytochrome_CBB3, Cytochrom_C
Heteromeric, 120 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

BT2158 predicted periplasmic glycoside 3-dehydrogenase (EC 1.1.99.13) from Bacteroides thetaiotaomicron VPI-5482
PFams: GFO_IDH_MocA
491 amino acids: PaperBLAST, CDD

SM_b20329 required for glucoside 3-dehydrogenase activity on raffinose or trehalose (thuA) (EC 1.1.99.13) from Sinorhizobium meliloti 1021
PFams: ThuA
270 amino acids: PaperBLAST, CDD

SM_b20330 glucoside 3-dehydrogenase; active on raffinose or trehalose (thuB) (EC 1.1.99.13) from Sinorhizobium meliloti 1021
PFams: GFO_IDH_MocA
365 amino acids: PaperBLAST, CDD