PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.13.11.3 as complete word(s)

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Found 14 characterized proteins with matching descriptions. 10 of these are heteromeric.

Fetched 14 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 14 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 201-246 amino acids (8/12 heteromeric)

I0DHJ1 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Stenotrophomonas maltophilia
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 239 amino acids: PaperBLAST, CDD, Compare to cluster

A0A193DXA9 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Rhizobium sp. LMB-1
PFams: Dioxygenase_C
Heteromeric, 206 amino acids: PaperBLAST, CDD, Compare to cluster

A0A193DXP2 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Rhizobium sp. LMB-1
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 246 amino acids: PaperBLAST, CDD, Compare to cluster

A8I4B3 protocatechuate 3,4-dioxygenase (EC 1.13.11.3) from Chromohalobacter sp.
PFams: PCDO_beta_N, Dioxygenase_C
246 amino acids: PaperBLAST, CDD, Compare to cluster

A8I4B7 protocatechuate 3,4-dioxygenase (EC 1.13.11.3) from Chromohalobacter sp.
PFams: Dioxygenase_C
210 amino acids: PaperBLAST, CDD, Compare to cluster

I0DHJ0 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Stenotrophomonas maltophilia
PFams: Dioxygenase_C
Heteromeric, 201 amino acids: PaperBLAST, CDD, Compare to cluster

Q0SH27 protocatechuate 3,4-dioxygenase (subunit 2/2) (EC 1.13.11.3) from Rhodococcus jostii
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 237 amino acids: PaperBLAST, CDD, Compare to cluster

RF|YP_046375.1 protocatechuate 3,4-dioxygenase, beta chain; EC 1.13.11.3 from Acinetobacter sp. ADP1
PFams: PCDO_beta_N, Dioxygenase_C
241 amino acids: PaperBLAST, CDD, Compare to cluster

RF|YP_046376.1 protocatechuate 3,4-dioxygenase, alpha chain; EC 1.13.11.3 from Acinetobacter sp. ADP1
PFams: Dioxygenase_C
209 amino acids: PaperBLAST, CDD, Compare to cluster

Q93PS2 protocatechuate 3,4-dioxygenase type II β subunit (EC 1.13.11.3) from Hydrogenophaga intermedia
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 241 amino acids: PaperBLAST, CDD, Compare to cluster

P00437 protocatechuate 3,4-dioxygenase β subunit (EC 1.13.11.3) from Pseudomonas putida
PFams: PCDO_beta_N, Dioxygenase_C
Heteromeric, 239 amino acids: PaperBLAST, CDD, Compare to cluster

P00436 protocatechuate 3,4-dioxygenase α subunit (EC 1.13.11.3) from Pseudomonas putida
PFams: Dioxygenase_C
Heteromeric, 201 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 195-213 amino acids (heteromeric)

Q0SH26 protocatechuate 3,4-dioxygenase (subunit 1/2) (EC 1.13.11.3) from Rhodococcus jostii
PFams: Dioxygenase_C
Heteromeric, 213 amino acids: PaperBLAST, CDD, Compare to cluster

Q93PS1 protocatechuate 3,4-dioxygenase type II α subunit (EC 1.13.11.3) from Hydrogenophaga intermedia
PFams: Dioxygenase_C
Heteromeric, 195 amino acids: PaperBLAST, CDD, Compare to cluster