PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.21.4.2 as complete word(s)

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Found 8 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 4 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 150-158 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

P26971 glycine reductase (EC 1.21.4.2) from Acetoanaerobium sticklandii
PFams: GRDA
158 amino acids: PaperBLAST, CDD, Compare to cluster

Q185M6 glycine reductase (EC 1.21.4.2) from Clostridioides difficile
PFams: GRDA
157 amino acids: PaperBLAST, CDD, Compare to cluster

P26970 glycine reductase system component A (EC 1.21.4.2) from Gottschalkia purinilytica
PFams: GRDA
150 amino acids: PaperBLAST, CDD, Compare to cluster

P50972 glycine/sarcosine/betaine reductase complex component A1 (EC 1.21.4.2) from Peptoclostridium acidaminophilum
PFams: GRDA
158 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/4 heteromeric)

Q9R4G7 glycine reductase (EC 1.21.4.2) from Peptoclostridium acidaminophilum
GI|2274933 glycine reductase, subunits ABC; EC 1.21.4.2 from Eubacterium acidaminophilum
PFams: Gly_reductase
428 amino acids: PaperBLAST, CDD

GI|2708734 glycine reductase complex component C, alpha subunit; EC 1.21.4.2; EC 1.21.4.3; EC 1.21.4.4 from Eubacterium acidaminophilum
PFams: FA_synthesis
385 amino acids: PaperBLAST, CDD

GI|1353198 glycine reductase complex component C, beta subunit; EC 1.21.4.2; EC 1.21.4.3; EC 1.21.4.4 from Eubacterium acidaminophilum
PFams: ACP_syn_III
513 amino acids: PaperBLAST, CDD

CH_090869 glycine reductase, selenoprotein B; EC 1.21.4.2 from Eubacterium acidaminophilum
PFams: GRDB
438 amino acids: PaperBLAST, CDD