PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.4.1.16 as complete word(s)

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Found 8 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 299-334 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q67PI3 diaminopimelate dehydrogenase (EC 1.4.1.16) from Symbiobacterium thermophilum
PFams: GFO_IDH_MocA, DAPDH_C
299 amino acids: PaperBLAST, CDD, Compare to cluster

Q7MW40 diaminopimelate dehydrogenase (EC 1.4.1.16) from Porphyromonas gingivalis
PFams: CoA_binding, GFO_IDH_MocA, DAPDH_C
301 amino acids: PaperBLAST, CDD, Compare to cluster

Q890V3 diaminopimelate dehydrogenase (EC 1.4.1.16) from Clostridium tetani
PFams: DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster

DAPDH_HUNT2 / A3DDX7 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Hungateiclostridium thermocellum (strain ATCC 27405 / DSM 1237 / JCM 9322 / NBRC 103400 / NCIMB 10682 / NRRL B-4536 / VPI 7372) (Clostridium thermocellum)
PFams: F420_oxidored, DAPDH_C
334 amino acids: PaperBLAST, CDD, Compare to cluster

DAPDH_URETH / G1UII1 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Ureibacillus thermosphaericus
G1UII1 diaminopimelate dehydrogenase (EC 1.4.1.16) from Ureibacillus thermosphaericus
PFams: DapB_N, DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster

P04964 meso-diaminopimelate D-dehydrogenase subunit (EC 1.4.1.16) from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
DAPDH_CORGL / P04964 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: DAPDH_C
320 amino acids: PaperBLAST, CDD, Compare to cluster

DAPDH_BACFN / Q5L9Q6 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16 from Bacteroides fragilis (strain ATCC 25285 / DSM 2151 / JCM 11019 / NCTC 9343)
PFams: GFO_IDH_MocA, Semialdhyde_dh, NAD_binding_3, DAPDH_C
299 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KWR0 meso-diaminopimelate dehydrogenase subunit (EC 1.4.1.16) from Lysinibacillus sphaericus
DAPDH_LYSSH / Q9KWR0 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; Meso-alpha,epsilon-diaminopimelate D-dehydrogenase; EC 1.4.1.16 from Lysinibacillus sphaericus (Bacillus sphaericus)
PFams: DapB_N, DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster