PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 1.4.1.18 as complete word(s)

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Found 4 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 368-385 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q5LX24 lysine 6-dehydrogenase (EC 1.4.1.18) from Ruegeria pomeroyi
PFams: Sacchrp_dh_NADP, TrkA_N, Sacchrp_dh_C
368 amino acids: PaperBLAST, CDD, Compare to cluster

Q3S559 lysine 6-dehydrogenase (EC 1.4.1.18) from Achromobacter denitrificans
PFams: F420_oxidored, Sacchrp_dh_NADP
368 amino acids: PaperBLAST, CDD, Compare to cluster

Q9AJC6 L-lysine 6-dehydrogenase subunit from Geobacillus stearothermophilus
LYSDH_GEOSE / Q9AJC6 Lysine 6-dehydrogenase; L-lysine 6-dehydrogenase; L-lysine epsilon-dehydrogenase; EC 1.4.1.18 from Geobacillus stearothermophilus (Bacillus stearothermophilus)
Q9AJC6 lysine 6-dehydrogenase (EC 1.4.1.18) from Geobacillus stearothermophilus
PFams: Shikimate_DH, Sacchrp_dh_NADP, Sacchrp_dh_C
385 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

O59312 lysine 6-dehydrogenase (EC 1.4.1.18) from Pyrococcus horikoshii
PFams: AlaDh_PNT_C, Sacchrp_dh_NADP, Sacchrp_dh_C
352 amino acids: PaperBLAST, CDD
(similar to SwissProt::Q9AJC6 from Cluster 1, but similarity to seed sequence is below thresholds)