PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 2.4.2.4 as complete word(s)

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Found 7 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 421-482 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

b4382 thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli K-12 substr. MG1655
P07650 thymidine phosphorylase (EC 2.4.2.2; EC 2.4.2.3) from Escherichia coli (strain K12)
P07650 thymidine phosphorylase (EC 2.4.2.4) from Escherichia coli
GB|AAC77335.1 thymidine phosphorylase; EC 2.4.2.4 from Escherichia coli K12
PFams: Glycos_trans_3N, Glycos_transf_3, PYNP_C
440 amino acids: PaperBLAST, CDD, Compare to cluster

P19971 thymidine phosphorylase monomer (EC 2.4.2.3; EC 2.4.2.2) from Homo sapiens
TYPH_HUMAN / P19971 Thymidine phosphorylase; TP; Gliostatin; Platelet-derived endothelial cell growth factor; PD-ECGF; TdRPase; EC 2.4.2.4 from Homo sapiens (Human)
P19971 thymidine phosphorylase (EC 2.4.2.4) from Homo sapiens
PFams: Glycos_trans_3N, Glycos_transf_3, PYNP_C
482 amino acids: PaperBLAST, CDD, Compare to cluster

P75052 thymidine phosphorylase (EC 2.4.2.4) from Mycoplasma pneumoniae
PFams: Glycos_trans_3N, Glycos_transf_3, PYNP_C
421 amino acids: PaperBLAST, CDD, Compare to cluster

Q7CP66 thymidine phosphorylase (EC 2.4.2.4) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: Glycos_trans_3N, Glycos_transf_3, PYNP_C
440 amino acids: PaperBLAST, CDD, Compare to cluster

Q99N42 thymidine phosphorylase (EC 2.4.2.4) from Mus musculus
PFams: Glycos_trans_3N, Glycos_transf_3, PYNP_C
471 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

b0391 nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli K-12 substr. MG1655
P0C037 nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.2; EC 2.4.2.1) from Escherichia coli (strain K12)
PPNP_ECOLI / P0C037 Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.15; EC 2.4.2.4; EC 2.4.2.3 from Escherichia coli (strain K12)
PFams: Ppnp
94 amino acids: PaperBLAST, CDD

TYPH_LACRH / P19663 Thymidine phosphorylase; TdRPase; EC 2.4.2.4 from Lactobacillus rhamnosus
PFams: Gp_dh_N
23 amino acids: PaperBLAST, CDD