Clusters of Characterized Proteins

PaperBLAST – Find papers about a protein or its homologs

Clusters of Characterized Proteins

Searching for 2.7.1.71 as complete word(s)

Found 15 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 15 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 14 of these sequences

Found 3 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 162-179 amino acids (not heteromeric)

A0A0M3KL09 shikimate kinase (EC 2.7.1.71) from Acinetobacter baumannii
PFams: AAA_33, SKI
179 amino acids: PaperBLAST, CDD, Compare to cluster

AROK_HELPY / P56073 Shikimate kinase; SK; EC 2.7.1.71 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
P56073 shikimate kinase (EC 2.7.1.71) from Helicobacter pylori
PFams: SKI
162 amino acids: PaperBLAST, CDD, Compare to cluster

AROK_MYCTU / P9WPY3 Shikimate kinase; SK; EC 2.7.1.71 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPY3 shikimate kinase (EC 2.7.1.71) from Mycobacterium tuberculosis
PFams: AAA_33, AAA_18, SKI
176 amino acids: PaperBLAST, CDD, Compare to cluster

b3390 shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli K-12 substr. MG1655
P0A6D7 shikimate kinase 1 (EC 2.7.1.71) from Escherichia coli (strain K12)
AROK_ECOLI / P0A6D7 Shikimate kinase 1; SK 1; Shikimate kinase I; SKI; EC 2.7.1.71 from Escherichia coli (strain K12)
PFams: AAA_18, AAA_33, Cytidylate_kin, SKI
173 amino acids: PaperBLAST, CDD, Compare to cluster

b0388 shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli K-12 substr. MG1655
P0A6E1 shikimate kinase 2 (EC 2.7.1.71) from Escherichia coli (strain K12)
AROL_ECOLI / P0A6E1 Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Escherichia coli (strain K12)
PFams: AAA, AAA_18, SKI
174 amino acids: PaperBLAST, CDD, Compare to cluster

AROL_DICCH / P10880 Shikimate kinase 2; SK 2; Shikimate kinase II; SKII; EC 2.7.1.71 from Dickeya chrysanthemi (Pectobacterium chrysanthemi) (Erwinia chrysanthemi)
PFams: AAA_18, AAA_33, SKI
173 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 287-308 amino acids (not heteromeric)

SK3_ORYSJ / Q7X7H9 Shikimate kinase 3, chloroplastic; OsSK3; EC 2.7.1.71 from Oryza sativa subsp. japonica (Rice)
Q7X7H9 shikimate kinase (EC 2.7.1.71) from Oryza sativa
PFams: AAA_18, SKI
287 amino acids: PaperBLAST, CDD, Compare to cluster

SK1_ORYSJ / Q5NTH4 Shikimate kinase 1, chloroplastic; OsSK1; EC 2.7.1.71 from Oryza sativa subsp. japonica (Rice)
Q5NTH4 shikimate kinase (EC 2.7.1.71) from Oryza sativa
PFams: AAA_18, SKI
308 amino acids: PaperBLAST, CDD, Compare to cluster

SK_SOLLC / Q00497 Shikimate kinase, chloroplastic; EC 2.7.1.71 from Solanum lycopersicum (Tomato) (Lycopersicon esculentum)
PFams: AAA_18, SKI
300 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SJ05 shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana
SK1_ARATH / Q9SJ05 Shikimate kinase 1, chloroplastic; AtSK1; EC 2.7.1.71 from Arabidopsis thaliana (Mouse-ear cress)
PFams: AAA_18, SKI
303 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 1583-1588 amino acids (not heteromeric)

ARO1_EMENI / P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
P07547 shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans
CH_122161 pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
PFams: Fe-ADH_2, DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, SDH_C
1583 amino acids: PaperBLAST, CDD, Compare to cluster

P08566 pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ARO1_YEAST / P08566 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
1588 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

SK2_ORYSJ / Q5NTH3 Shikimate kinase 2, chloroplastic; OsSK2; EC 2.7.1.71 from Oryza sativa subsp. japonica (Rice)
Q5NTH3 shikimate kinase (EC 2.7.1.71) from Oryza sativa
PFams: CoaE, AAA_18, SKI
307 amino acids: PaperBLAST, CDD
(similar to BRENDA::Q5NTH4 from Cluster 2, but similarity to seed sequence is below thresholds)

Q8GY88 shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana
SK2_ARATH / Q8GY88 Shikimate kinase 2, chloroplastic; AtSK2; EC 2.7.1.71 from Arabidopsis thaliana (Mouse-ear cress)
Q8GY88 shikimate kinase (EC 2.7.1.71) from Arabidopsis thaliana
PFams: AAA_18, CoaE, SKI
300 amino acids: PaperBLAST, CDD
(similar to SwissProt::Q00497 from Cluster 2, but similarity to seed sequence is below thresholds)

Q58835 shikimate kinase (EC 2.7.1.71) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
AROK_METJA / Q58835 Shikimate kinase; SK; EC 2.7.1.71 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
PFams: GHMP_kinases_N, GHMP_kinases_C
282 amino acids: PaperBLAST, CDD