PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 2.8.3.6 as complete word(s)

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Found 10 characterized proteins with matching descriptions. 4 of these are heteromeric.

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 2 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 282-285 amino acids (1/4 heteromeric)

CATI_PSEKB / Q8VPF3 3-oxoadipate CoA-transferase subunit A; 3-oxoadipate:succinyl-CoA transferase subunit A; Beta-ketoadipate:succinyl-CoA transferase subunit A; EC 2.8.3.6 from Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13)
Q8VPF3 3-oxoadipate CoA-transferase (subunit 2/2) (EC 2.8.3.6) from Pseudomonas knackmussii
PFams: CoA_trans
Heteromeric, 282 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_06700 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas simiae WCS417
PFams: CoA_trans
285 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4592 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens GW456-L13
PFams: CoA_trans
285 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_17195 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens FW300-N2E3
PFams: CoA_trans
285 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 259-260 amino acids (1/4 heteromeric)

CATJ_PSEKB / Q8VPF2 3-oxoadipate CoA-transferase subunit B; 3-oxoadipate:succinyl-CoA transferase subunit B; Beta-ketoadipate:succinyl-CoA transferase subunit B; EC 2.8.3.6 from Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13)
Q8VPF2 3-oxoadipate CoA-transferase (subunit 1/2) (EC 2.8.3.6) from Pseudomonas knackmussii
PFams: CoA_trans
Heteromeric, 260 amino acids: PaperBLAST, CDD, Compare to cluster

PS417_06705 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas simiae WCS417
PFams: CoA_trans
259 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_4591 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens GW456-L13
PFams: CoA_trans
259 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_17200 3-oxoadipate CoA-transferase (EC 2.8.3.6) from Pseudomonas fluorescens FW300-N2E3
PFams: CoA_trans
259 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (2/2 heteromeric)

P0A102 β subunit of β-ketoadipate succinyl-CoA transferase (EC 2.8.3.6) from Pseudomonas putida
P0A102 3-oxoadipate CoA-transferase (subunit 1/2) (EC 2.8.3.6) from Pseudomonas putida
GI|151428 3-oxoadipate CoA-transferase subunit B; EC 2.8.3.6 from Pseudomonas putida
PFams: CoA_trans
Heteromeric, 213 amino acids: PaperBLAST, CDD

Q01103 α subunit of β-ketoadipate succinyl-CoA transferase (EC 2.8.3.6) from Pseudomonas putida
Q01103 3-oxoadipate CoA-transferase (subunit 2/2) (EC 2.8.3.6) from Pseudomonas putida
GB|AAA25922.1 3-oxoadipate CoA-transferase subunit A; EC 2.8.3.6 from Pseudomonas putida
PFams: CoA_trans
Heteromeric, 231 amino acids: PaperBLAST, CDD