PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 3.5.3.11 as complete word(s)

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Found 12 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 12 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 271-361 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q9BSE5 agmatinase (EC 3.5.3.11) from Homo sapiens
SPEB_HUMAN / Q9BSE5 Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Homo sapiens (Human)
Q9BSE5 agmatinase (EC 3.5.3.11) from Homo sapiens
PFams: Arginase
352 amino acids: PaperBLAST, CDD, Compare to cluster

D4GWG4 agmatinase (EC 3.5.3.11) from Haloferax volcanii
PFams: Arginase
271 amino acids: PaperBLAST, CDD, Compare to cluster

SPEB_METJA / Q57757 Agmatinase; EC 3.5.3.11 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
Q57757 agmatinase (EC 3.5.3.11) from Methanocaldococcus jannaschii
PFams: Arginase
284 amino acids: PaperBLAST, CDD, Compare to cluster

W5PHZ9 agmatinase (EC 3.5.3.11) from Ovis aries
PFams: Arginase
361 amino acids: PaperBLAST, CDD, Compare to cluster

b2937 agmatinase (EC 3.5.3.11) from Escherichia coli K-12 substr. MG1655
P60651 agmatinase (EC 3.5.3.11) from Escherichia coli (strain K12)
SPEB_ECOLI / P60651 Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli (strain K12)
RF|NP_417412 agmatinase; EC 3.5.3.11 from Escherichia coli K12
PFams: Arginase
306 amino acids: PaperBLAST, CDD, Compare to cluster

SPEB_MOUSE / A2AS89 Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Mus musculus (Mouse)
PFams: Arginase
358 amino acids: PaperBLAST, CDD, Compare to cluster

AGMT_PYRHO / O57839 Agmatinase; EC 3.5.3.11 from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
PFams: Arginase
283 amino acids: PaperBLAST, CDD, Compare to cluster

P46637 arginase (EC 3.5.3.1) from Arabidopsis thaliana
ARGI1_ARATH / P46637 Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Arginase
342 amino acids: PaperBLAST, CDD, Compare to cluster

SPEB_PROMI / Q7X3P1 Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis
PFams: Arginase
306 amino acids: PaperBLAST, CDD, Compare to cluster

ARGI2_ARATH / Q9ZPF5 Arginase 2, chloroplastic/mitochondrial; Agmatinase ARGAH2; Arginine amidohydrolase 2; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Arginase
344 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

Q5JI38 aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
SPEBH_THEKO / Q5JI38 N(1)-aminopropylagmatine ureohydrolase; Agmatinase; Protein SpeB homolog; EC 3.5.3.24; EC 3.5.3.11 from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Q5JI38 N1-aminopropylagmatine ureohydrolase (EC 3.5.3.24) from Thermococcus kodakarensis
PFams: Arginase
288 amino acids: PaperBLAST, CDD
(similar to BRENDA::D4GWG4 from Cluster 1, but similarity to seed sequence is below thresholds)

Q8YUM9 agmatinase (EC 3.5.3.11) from Anabaena sp.
PFams: Arginase
346 amino acids: PaperBLAST, CDD