PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 4.1.1.20 as complete word(s)

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Found 13 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 13 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 13 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 386-489 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q9KVL7 diaminopimelate decarboxylase (EC 4.1.1.20) from Vibrio cholerae serotype O1
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N, Ala_racemase_N
417 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1S0QVH4 diaminopimelate decarboxylase (EC 4.1.1.20) from Bacillus anthracis
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
438 amino acids: PaperBLAST, CDD, Compare to cluster

b2838 diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli K-12 substr. MG1655
P00861 diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli (strain K12)
DCDA_ECOLW / E0IWI3 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain ATCC 9637 / CCM 2024 / DSM 1116 / NCIMB 8666 / NRRL B-766 / W)
DCDA_ECOLI / P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
P00861 diaminopimelate decarboxylase (EC 4.1.1.20) from Escherichia coli
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
420 amino acids: PaperBLAST, CDD, Compare to cluster

DCDA_CORGL / P09890 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
P09890 diaminopimelate decarboxylase (EC 4.1.1.20) from Corynebacterium glutamicum
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
445 amino acids: PaperBLAST, CDD, Compare to cluster

P56129 diaminopimelate decarboxylase (EC 4.1.1.20) from Helicobacter pylori
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
405 amino acids: PaperBLAST, CDD, Compare to cluster

DCDA_MYCTU / P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIU7 diaminopimelate decarboxylase (EC 4.1.1.20) from Mycobacterium tuberculosis
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
447 amino acids: PaperBLAST, CDD, Compare to cluster

Q949X7 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
DCDA1_ARATH / Q949X7 Diaminopimelate decarboxylase 1, chloroplastic; DAP decarboxylase 1; DAPDC 1; EC 4.1.1.20 from Arabidopsis thaliana (Mouse-ear cress)
Q949X7 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
PFams: Ala_racemase_N, Orn_Arg_deC_N, Orn_DAP_Arg_deC
484 amino acids: PaperBLAST, CDD, Compare to cluster

Q94A94 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
DCDA2_ARATH / Q94A94 Diaminopimelate decarboxylase 2, chloroplastic; DAP decarboxylase 2; DAPDC 2; EC 4.1.1.20 from Arabidopsis thaliana (Mouse-ear cress)
Q94A94 diaminopimelate decarboxylase (EC 4.1.1.20) from Arabidopsis thaliana
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
489 amino acids: PaperBLAST, CDD, Compare to cluster

DCDA_HELPX / B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori)
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
405 amino acids: PaperBLAST, CDD, Compare to cluster

DCDA_METJA / Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
438 amino acids: PaperBLAST, CDD, Compare to cluster

DCDA_STAAC / Q5HG20 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Staphylococcus aureus (strain COL)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
421 amino acids: PaperBLAST, CDD, Compare to cluster

DCDA_THEMA / Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: Orn_Arg_deC_N, Orn_DAP_Arg_deC
386 amino acids: PaperBLAST, CDD, Compare to cluster

P23630 diaminopimelate decarboxylase subunit (EC 4.1.1.20) from Bacillus subtilis (strain 168)
PFams: Orn_DAP_Arg_deC, Orn_Arg_deC_N
439 amino acids: PaperBLAST, CDD, Compare to cluster