PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 4.1.3.1 as complete word(s)

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Found 36 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 36 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 33 of these sequences

Found 4 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 537-766 amino acids (not heteromeric)

Q4HYR2 isocitrate lyase (EC 4.1.3.1) from Fusarium graminearum
PFams: ICL, PEP_mutase
546 amino acids: PaperBLAST, CDD, Compare to cluster

Q5YLB6 isocitrate lyase (EC 4.1.3.1) from Paracoccidioides brasiliensis
PFams: ICL, PEP_mutase
537 amino acids: PaperBLAST, CDD, Compare to cluster

Q9P8Q7 isocitrate lyase (EC 4.1.3.1) from Candida albicans
PFams: ICL, PEP_mutase
550 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA2_MYCTE / H8F3R6 Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
ACEA2_MYCTO / Q8VJU4 Isocitrate lyase 2; ICL2; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
PFams: ICL, PEP_mutase, ICL
766 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_MAGO7 / P0CT06 Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (Rice blast fungus) (Pyricularia oryzae)
P0CT06 isocitrate lyase (EC 4.1.3.1) from Magnaporthe oryzae
CH_124286 isocitrate lyase from Magnaporthe grisea 70-15
PFams: ICL, PEP_mutase
547 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_BRANA / P25248 Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Brassica napus (Rape)
PFams: ICL, PEP_mutase
576 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_YEAST / P28240 Isocitrate lyase; ICL; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: ICL, PEP_mutase
557 amino acids: PaperBLAST, CDD, Compare to cluster

P28297 isocitrate lyase (EC 4.1.3.1) from Arabidopsis thaliana
ACEA_ARATH / P28297 Isocitrate lyase; ICL; Isocitrase; Isocitratsysase; EC 4.1.3.1 from Arabidopsis thaliana (Mouse-ear cress)
PFams: ICL, PEP_mutase
576 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_EMENI / P28298 Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
PDB|1DQU_A isocitrate lyase; EC 4.1.3.1 from Emericella nidulans
PFams: ICL, PEP_mutase
538 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_NEUCR / P28299 Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
PFams: ICL, PEP_mutase
548 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_YARLI / P41555 Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Yarrowia lipolytica (strain CLIB 122 / E 150) (Yeast) (Candida lipolytica)
PFams: ICL, PEP_mutase
540 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_ORYSJ / Q6Z6M4 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Oryza sativa subsp. japonica (Rice)
PFams: ICL, PEP_mutase
572 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_LEPMC / Q86ZF1 Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Leptosphaeria maculans (Blackleg fungus) (Phoma lingam)
PFams: ICL, PEP_mutase
537 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_KLULA / Q8NJ72 Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (Yeast) (Candida sphaerica)
PFams: ICL, PEP_mutase
542 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 428-528 amino acids (not heteromeric)

ACEA_CORGL / P42449 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
PFams: ICL, PEP_mutase, ICL
432 amino acids: PaperBLAST, CDD, Compare to cluster

A8C5K8 isocitrate lyase (EC 4.1.3.1) from Colwellia psychrerythraea
PFams: ICL, PEP_mutase, ICL, ICL
528 amino acids: PaperBLAST, CDD, Compare to cluster

P9WKK7 isocitrate lyase subunit (EC 4.1.3.1) from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
ACEA1_MYCTE / H8EVV4 Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
ACEA1_MYCBO / P0A5H4 Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
ACEA1_MYCTO / P9WKK6 Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
ACEA_MYCTU / P9WKK7 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WKK7 isocitrate lyase (EC 4.1.3.1) from Mycobacterium tuberculosis
PFams: ICL, PEP_mutase, ICL
428 amino acids: PaperBLAST, CDD, Compare to cluster

Q8RPZ0 isocitrate lyase (EC 4.1.3.1) from Streptomyces clavuligerus
PFams: ICL, ICL
436 amino acids: PaperBLAST, CDD, Compare to cluster

Q93R40 isocitrate lyase (EC 4.1.3.1) from Colwellia maris
PFams: ICL, PEP_mutase, ICL, ICL
528 amino acids: PaperBLAST, CDD, Compare to cluster

Q97YI8 isocitrate lyase (EC 4.1.3.1) from Saccharolobus solfataricus
PFams: ICL, PEP_mutase, ICL
437 amino acids: PaperBLAST, CDD, Compare to cluster

b4015 isocitrate lyase (EC 4.1.3.1) from Escherichia coli K-12 substr. MG1655
P0A9G6 isocitrate lyase (EC 4.1.3.1) from Escherichia coli (strain K12)
ACEA_ECOLI / P0A9G6 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Escherichia coli (strain K12)
PFams: ICL, PEP_mutase, ICL
434 amino acids: PaperBLAST, CDD, Compare to cluster

BWI76_RS01665 Isocitrate lyase (EC 4.1.3.1) from Klebsiella michiganensis M5al
PFams: ICL, PEP_mutase, ICL
434 amino acids: PaperBLAST, CDD, Compare to cluster

SO1484 Isocitrate lyase (EC 4.1.3.1) from Shewanella oneidensis MR-1
PFams: ICL, PEP_mutase, ICL
440 amino acids: PaperBLAST, CDD, Compare to cluster

Shew_1276 Isocitrate lyase (EC 4.1.3.1) from Shewanella loihica PV-4
PFams: ICL, PEP_mutase, ICL
450 amino acids: PaperBLAST, CDD, Compare to cluster

Sama_2380 Isocitrate lyase (EC 4.1.3.1) from Shewanella amazonensis SB2B
PFams: ICL, PEP_mutase, ICL
439 amino acids: PaperBLAST, CDD, Compare to cluster

Ac3H11_2831 Isocitrate lyase (EC 4.1.3.1) from Acidovorax sp. GW101-3H11
PFams: ICL, PEP_mutase, ICL
443 amino acids: PaperBLAST, CDD, Compare to cluster

Pf1N1B4_4042 Isocitrate lyase (EC 4.1.3.1) from Pseudomonas fluorescens FW300-N1B4
PFams: ICL, PEP_mutase, ICL
441 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 531-540 amino acids (not heteromeric)

A8C781 isocitrate lyase (EC 4.1.3.1) from Azotobacter vinelandii
PFams: ICL, PEP_mutase, ICL, ICL
531 amino acids: PaperBLAST, CDD, Compare to cluster

Q9I0K4 isocitrate lyase (EC 4.1.3.1) from Pseudomonas aeruginosa
PFams: ICL, PEP_mutase, ICL, ICL
531 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_HYPME / O50078 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Hyphomicrobium methylovorum
PFams: ICL, PEP_mutase, ICL, ICL
540 amino acids: PaperBLAST, CDD, Compare to cluster

Psest_2014 Isocitrate lyase (EC 4.1.3.1) from Pseudomonas stutzeri RCH2
PFams: ICL, PEP_mutase, ICL, ICL
531 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 318-345 amino acids (not heteromeric)

PDP_DIACA / Q05957 Petal death protein; Citramalate lyase; Oxalacetic hydrolase; PSR132; EC 3.7.1.1; EC 4.1.3.22 from Dianthus caryophyllus (Carnation) (Clove pink)
Q05957 isocitrate lyase (EC 4.1.3.1) from Dianthus caryophyllus
PFams: PEP_mutase, ICL
318 amino acids: PaperBLAST, CDD, Compare to cluster

ACEA_HALVD / D4GTL3 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
PFams: PEP_mutase, ICL, ICL
345 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

Q8LPA6 isocitrate lyase (EC 4.1.3.1) from Euglena gracilis
PFams: Malate_synthase, HpcH_HpaI, ICL, ICL
1165 amino acids: PaperBLAST, CDD

ACEA_ACICA / P28467 Isocitrate lyase; ICL; Isocitrase; Isocitratase; EC 4.1.3.1 from Acinetobacter calcoaceticus
CH_017389 isocitrate lyase; EC 4.1.3.1 from Acinetobacter calcoaceticus
15 amino acids: PaperBLAST, CDD

GCP_CAEEL / Q10663 Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans
PFams: ICL, PEP_mutase, ICL, Malate_synthase
968 amino acids: PaperBLAST, CDD