PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 4.2.3.5 as complete word(s)

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Found 11 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 11 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 361-442 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

B5AAU3 chorismate synthase (EC 4.2.3.5) from Hordeum vulgare
PFams: Chorismate_synt
442 amino acids: PaperBLAST, CDD, Compare to cluster

C8Z2I6 chorismate synthase (EC 4.2.3.5) from Verticillium longisporum
PFams: Chorismate_synt
408 amino acids: PaperBLAST, CDD, Compare to cluster

Q71Y87 chorismate synthase (EC 4.2.3.5) from Listeria monocytogenes
PFams: Chorismate_synt
388 amino acids: PaperBLAST, CDD, Compare to cluster

AROC_AQUAE / O66493 Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Aquifex aeolicus (strain VF5)
PFams: Chorismate_synt
398 amino acids: PaperBLAST, CDD, Compare to cluster

AROC_STRPN / P0A2Y6 Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
PFams: Chorismate_synt
388 amino acids: PaperBLAST, CDD, Compare to cluster

b2329 chorismate synthase (EC 4.2.3.5) from Escherichia coli K-12 substr. MG1655
P12008 chorismate synthase (EC 4.2.3.5) from Escherichia coli (strain K12)
AROC_ECOLI / P12008 Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EPSP phospholyase; EC 4.2.3.5 from Escherichia coli (strain K12)
PFams: Chorismate_synt
361 amino acids: PaperBLAST, CDD, Compare to cluster

AROC_YEAST / P28777 Chorismate synthase; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: Chorismate_synt
376 amino acids: PaperBLAST, CDD, Compare to cluster

AROC_HELPY / P56122 Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
PFams: Chorismate_synt
365 amino acids: PaperBLAST, CDD, Compare to cluster

AROC_MYCTU / P9WPY1 Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
PFams: Chorismate_synt
401 amino acids: PaperBLAST, CDD, Compare to cluster

AROC_STAAU / Q59803 Chorismate synthase; CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; EC 4.2.3.5 from Staphylococcus aureus
PFams: Chorismate_synt
388 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

O15864 chorismate synthase (EC 4.2.3.5) from Plasmodium falciparum
PFams: Chorismate_synt
527 amino acids: PaperBLAST, CDD