PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 4.3.1.9 as complete word(s)

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Found 6 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 402-405 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

PS417_12125 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas simiae WCS417
A0A1N7U313 glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas simiae
PFams: Ala_racemase_N, D-ser_dehydrat
402 amino acids: PaperBLAST, CDD, Compare to cluster

PfGW456L13_2867 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens GW456-L13
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster

AO353_21740 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens FW300-N2E3
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster

AO356_00450 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens FW300-N2C3
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster

Pf6N2E2_2047 D-glucosaminate dehydratase (EC 4.3.1.9) from Pseudomonas fluorescens FW300-N2E2
PFams: Ala_racemase_N, D-ser_dehydrat
405 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

GLCAL_PSEFL / Q93HX6 Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6 glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens
PFams: Pyr_redox_2, Pyr_redox_3, Pyr_redox
320 amino acids: PaperBLAST, CDD