PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 5.1.1.5 as complete word(s)

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Found 5 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 407-409 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

LYR_PROMI / M4GGR9 Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9 lysine racemase (EC 5.1.1.5) from Proteus mirabilis
PFams: Ala_racemase_N, Ala_racemase_C
407 amino acids: PaperBLAST, CDD, Compare to cluster

Q88GJ9 amino acid racemase (EC 5.1.1.10; EC 5.1.1.24; EC 5.1.1.18; EC 5.1.1.2; EC 5.1.1.9; EC 5.1.1.5; EC 5.1.1.1) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
BSR_PSEPK / Q88GJ9 Broad specificity amino-acid racemase; Broad spectrum racemase; EC 5.1.1.10 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
PFams: Ala_racemase_N, Ala_racemase_C
409 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

C7ACH5 lysine racemase (EC 5.1.1.5) from uncultured bacterium
PFams: MR_MLE_N, Semialdhyde_dh
393 amino acids: PaperBLAST, CDD

LYSR_OENOB / Q04HB7 Lysine racemase; EC 5.1.1.5 from Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
Q04HB7 lysine racemase (EC 5.1.1.5) from Oenococcus oeni
PFams: Ala_racemase_N, Ala_racemase_C
371 amino acids: PaperBLAST, CDD

LYSRA_THEMA / Q9X1T3 Lysine racemase; Lys racemase; Ornithine racemase; EC 5.1.1.5; EC 5.1.1.12 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: Ala_racemase_N
354 amino acids: PaperBLAST, CDD