PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 5.1.1.7 as complete word(s)

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Found 8 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 274-362 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

E4NI20 diaminopimelate epimerase (EC 5.1.1.7) from Kitasatospora setae
PFams: DAP_epimerase, DAP_epimerase
295 amino acids: PaperBLAST, CDD, Compare to cluster

DAPF_MYCTU / P9WP19 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WP19 diaminopimelate epimerase (EC 5.1.1.7) from Mycobacterium tuberculosis
PFams: DAP_epimerase, DAP_epimerase
289 amino acids: PaperBLAST, CDD, Compare to cluster

DAPF_CORGL / Q8NP73 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
Q8NP73 diaminopimelate epimerase (EC 5.1.1.7) from Corynebacterium glutamicum
PFams: DAP_epimerase, DAP_epimerase
277 amino acids: PaperBLAST, CDD, Compare to cluster

DAPF_ARATH / Q9LFG2 Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7 from Arabidopsis thaliana (Mouse-ear cress)
Q9LFG2 diaminopimelate epimerase (EC 5.1.1.7) from Arabidopsis thaliana
PFams: DAP_epimerase, DAP_epimerase
362 amino acids: PaperBLAST, CDD, Compare to cluster

b3809 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli K-12 substr. MG1655
P0A6K1 diaminopimelate epimerase (EC 5.1.1.7) from Escherichia coli (strain K12)
DAPF_ECOLI / P0A6K1 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Escherichia coli (strain K12)
PFams: DAP_epimerase, PhzC-PhzF, DAP_epimerase
274 amino acids: PaperBLAST, CDD, Compare to cluster

DAPF_HAEIN / P44859 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
PFams: DAP_epimerase, PhzC-PhzF, DAP_epimerase
274 amino acids: PaperBLAST, CDD, Compare to cluster

DAPF_BACAN / Q81XR2 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Bacillus anthracis
PFams: DAP_epimerase, PhzC-PhzF, DAP_epimerase
288 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

DAPF_THEMA / Q9X1L0 Diaminopimelate epimerase; DAP epimerase; Dpm epimerase; PLP-independent amino acid racemase; EC 5.1.1.7 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: DAP_epimerase, DAP_epimerase
236 amino acids: PaperBLAST, CDD
(similar to BRENDA::Q8NP73 from Cluster 1, but similarity to seed sequence is below thresholds)