PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 5.3.1.16 as complete word(s)

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Found 7 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 2 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 261-304 amino acids (not heteromeric)

Q5TKS8 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Arabidopsis thaliana
PFams: His_biosynth
304 amino acids: PaperBLAST, CDD, Compare to cluster

HIS4_YEAST / P40545 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; 5-proFAR isomerase; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: His_biosynth
261 amino acids: PaperBLAST, CDD, Compare to cluster

O82782 phosphoribosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide isomerase (EC 5.3.1.16) from Arabidopsis thaliana
PFams: His_biosynth
304 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 240-245 amino acids (not heteromeric)

P10372 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: His_biosynth, Trp_syntA
245 amino acids: PaperBLAST, CDD, Compare to cluster

HIS4_STRCO / P16250 Phosphoribosyl isomerase A; 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; N-(5'-phosphoribosyl)anthranilate isomerase; PRAI; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16; EC 5.3.1.24 from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P16250 phosphoribosylanthranilate isomerase (EC 5.3.1.24) from Streptomyces coelicolor
PFams: His_biosynth
240 amino acids: PaperBLAST, CDD, Compare to cluster

b2024 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli K-12 substr. MG1655
P10371 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Escherichia coli (strain K12)
PFams: His_biosynth, Trp_syntA
245 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

HIS4_THEMA / Q9X0C7 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; EC 5.3.1.16 from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: His_biosynth
241 amino acids: PaperBLAST, CDD