PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 5.3.3.7 as complete word(s)

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Found 3 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 397-443 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

PRPF_SHEON / Q8EJW4 2-methyl-aconitate isomerase; Cis-trans isomerase; EC 5.3.3.- from Shewanella oneidensis (strain MR-1)
Q8EJW4 aconitate DELTA-isomerase (EC 5.3.3.7) from Shewanella oneidensis
PFams: PrpF
397 amino acids: PaperBLAST, CDD, Compare to cluster

A0A0U2X0E4 aconitate-Δ-isomerase 1 (EC 5.3.3.7) from Ustilago maydis
ADI1_USTMD / A0A0U2X0E4 Aconitate-delta-isomerase 1; Itaconic acid/2-hydroxyparaconate biosynthesis cluster protein ADI1; EC 5.-.-.- from Ustilago maydis (Corn smut fungus)
PFams: PrpF
443 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

AIS_PSESP / A0A0A1H8I4 Aconitate isomerase; AI; EC 5.3.3.7 from Pseudomonas sp.
A0A0A1H8I4 aconitate DELTA-isomerase (EC 5.3.3.7) from Pseudomonas sp. WU-0701
PFams: SBP_bac_11
262 amino acids: PaperBLAST, CDD