Clusters of Characterized Proteins

PaperBLAST – Find papers about a protein or its homologs

Clusters of Characterized Proteins

Searching for EC 1.1.1.25 as complete word(s)

Found 33 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 33 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 32 of these sequences

Found 3 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 253-291 amino acids (not heteromeric)

O27957 shikimate dehydrogenase (EC 1.1.1.25) from Archaeoglobus fulgidus
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
269 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1K3RIC7 shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
272 amino acids: PaperBLAST, CDD, Compare to cluster

A4QEK4 shikimate dehydrogenase (EC 1.1.1.25) from Corynebacterium glutamicum
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
276 amino acids: PaperBLAST, CDD, Compare to cluster

b3281 shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli K-12 substr. MG1655
P15770 shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli (strain K12)
AROE_ECOLI / P15770 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Escherichia coli (strain K12)
P15770 shikimate dehydrogenase (EC 1.1.1.25) from Escherichia coli
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
272 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_HAEIN / P43876 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P43876 shikimate dehydrogenase (EC 1.1.1.25) from Haemophilus influenzae
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
272 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_THET8 / Q5SJF8 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Q5SJF8 shikimate dehydrogenase (EC 1.1.1.25) from Thermus thermophilus
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
263 amino acids: PaperBLAST, CDD, Compare to cluster

Q88GF6 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida
PFams: Shikimate_dh_N
273 amino acids: PaperBLAST, CDD, Compare to cluster

Q88IJ7 shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida KT2440
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
272 amino acids: PaperBLAST, CDD, Compare to cluster

Q88JP1 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida
PFams: Shikimate_dh_N
269 amino acids: PaperBLAST, CDD, Compare to cluster

Q88K85 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Pseudomonas putida
PFams: Shikimate_dh_N
282 amino acids: PaperBLAST, CDD, Compare to cluster

Q88RQ5 shikimate dehydrogenase (EC 1.1.1.25) from Pseudomonas putida
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
274 amino acids: PaperBLAST, CDD, Compare to cluster

Q9WYI1 shikimate dehydrogenase (EC 1.1.1.25) from Thermotoga maritima
PFams: Shikimate_dh_N, Shikimate_DH
253 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_CORGB / A4QB65 Quinate/shikimate dehydrogenase (NAD(+)); QSDH; EC 1.1.1.-; EC 1.1.1.24 from Corynebacterium glutamicum (strain R)
A4QB65 shikimate dehydrogenase (EC 1.1.1.25); quinate/shikimate dehydrogenase (EC 1.1.1.282) from Corynebacterium glutamicum
PFams: Shikimate_dh_N, SDH_C
283 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_AQUAE / O67049 Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus (strain VF5)
O67049 shikimate dehydrogenase (EC 1.1.1.25) from Aquifex aeolicus
PFams: Shikimate_dh_N, Shikimate_DH, F420_oxidored, SDH_C
269 amino acids: PaperBLAST, CDD, Compare to cluster

SHDHL_HAEIN / P44774 Shikimate dehydrogenase-like protein HI_0607; SDH-L; EC 1.1.1.25 from Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
PFams: Shikimate_dh_N
271 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_HELPY / P56119 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
PFams: Shikimate_dh_N
263 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_HELPX / Q56S04 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Helicobacter pylori (Campylobacter pylori)
Q56S04 shikimate dehydrogenase (EC 1.1.1.25) from Helicobacter pylori
PFams: Shikimate_dh_N
263 amino acids: PaperBLAST, CDD, Compare to cluster

Q58484 shikimate dehydrogenase monomer (EC 1.1.1.25) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
AROE_METJA / Q58484 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
282 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_STAEQ / Q5HNV1 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Q5HNV1 shikimate dehydrogenase (EC 1.1.1.25) from Staphylococcus epidermidis RP62A
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
269 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_GEOKA / Q5KWX7 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Geobacillus kaustophilus (strain HTA426)
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
276 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_LISMO / Q8Y9N5 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
PFams: Shikimate_dh_N, SDH_C
291 amino acids: PaperBLAST, CDD, Compare to cluster

AROE_VIBCH / Q9KVT3 Shikimate dehydrogenase (NADP(+)); SDH; EC 1.1.1.25 from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
PFams: Shikimate_dh_N, Shikimate_DH, SDH_C
278 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 519-603 amino acids (not heteromeric)

A0A168S2B8 shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
519 amino acids: PaperBLAST, CDD, Compare to cluster

A0A168S2G5 shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
531 amino acids: PaperBLAST, CDD, Compare to cluster

A0A168S2H6 shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, F420_oxidored, SDH_C
531 amino acids: PaperBLAST, CDD, Compare to cluster

D7TUX1 shikimate dehydrogenase (EC 1.1.1.25) from Vitis vinifera
PFams: DHquinase_I, Shikimate_dh_N, SDH_C
519 amino acids: PaperBLAST, CDD, Compare to cluster

Q6PUF9 shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, F420_oxidored
569 amino acids: PaperBLAST, CDD, Compare to cluster

Q6PUG0 shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10) from Nicotiana tabacum
PFams: DHquinase_I, Shikimate_dh_N, SDH_C
521 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SQT8 shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10) from Arabidopsis thaliana
DHQSD_ARATH / Q9SQT8 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25 from Arabidopsis thaliana (Mouse-ear cress)
Q9SQT8 3-dehydroquinate dehydratase (EC 4.2.1.10) from Arabidopsis thaliana
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, IlvN, F420_oxidored, FAD_binding_2, SDH_C
603 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 1583-1588 amino acids (not heteromeric)

ARO1_EMENI / P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans)
P07547 shikimate dehydrogenase (EC 1.1.1.25) from Aspergillus nidulans
CH_122161 pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
PFams: Fe-ADH_2, DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, SDH_C
1583 amino acids: PaperBLAST, CDD, Compare to cluster

P08566 pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
ARO1_YEAST / P08566 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
1588 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

A5U5Q2 shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis
P95001 shikimate dehydrogenase (EC 1.1.1.25) from Mycobacterium tuberculosis
PFams: Shikimate_dh_N, SDH_C
269 amino acids: PaperBLAST, CDD
(similar to BRENDA::A4QEK4 from Cluster 1, but similarity to seed sequence is below thresholds)

Q6W3D0 shikimate dehydrogenase (EC 1.1.1.25) from Toxoplasma gondii
PFams: DHQ_synthase, DHQ_synthase, EPSP_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N
3332 amino acids: PaperBLAST, CDD