PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for EC 1.3.1.12 as complete word(s)

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Found 10 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 2 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 287-368 amino acids (not heteromeric)

TYRC_ZYMMO / Q04983 Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12 from Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
PFams: 2-Hacid_dh_C, IlvN, F420_oxidored, NAD_binding_2, PDH
293 amino acids: PaperBLAST, CDD, Compare to cluster

J9XQS6 prephenate dehydrogenase (EC 1.3.1.12) from uncultured bacterium
PFams: PDH
287 amino acids: PaperBLAST, CDD, Compare to cluster

O67636 prephenate dehydrogenase (EC 1.3.1.12) from Aquifex aeolicus
PFams: NAD_binding_2, PDH
311 amino acids: PaperBLAST, CDD, Compare to cluster

Q8DUW0 prephenate dehydrogenase (EC 1.3.1.12) from Streptococcus mutans
PFams: F420_oxidored, NAD_binding_2, PDH
368 amino acids: PaperBLAST, CDD, Compare to cluster

TYRA_MYCTU / O69721 Prephenate dehydrogenase; PDH; EC 1.3.1.12 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
PFams: F420_oxidored, PDH
323 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 373-377 amino acids (not heteromeric)

P43902 prephenate dehydrogenase (EC 1.3.1.12) from Haemophilus influenzae
PFams: CM_2, PDH
377 amino acids: PaperBLAST, CDD, Compare to cluster

b2600 fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli K-12 substr. MG1655
P07023 fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12) from Escherichia coli (strain K12)
PFams: CM_2, PDH
373 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/3 heteromeric)

A0A386QX79 prephenate dehydrogenase (EC 1.3.1.12) from Pleurotus ostreatus
PFams: F420_oxidored, NAD_binding_2, PDH
491 amino acids: PaperBLAST, CDD

O30012 prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus
PFams: PDH, CM_2, PDT, ACT
620 amino acids: PaperBLAST, CDD

Q9L9G2 prephenate dehydrogenase (EC 1.3.1.12) from Streptomyces niveus
PFams: PDH
362 amino acids: PaperBLAST, CDD