PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for EC 4.1.2.8 as complete word(s)

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Found 10 characterized proteins with matching descriptions. 1 of these are heteromeric.

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 239-347 amino acids (1/10 heteromeric)

The first sequence in each cluster is the seed.

A0A1C9CXC5 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Persicaria tinctoria
PFams: Trp_syntA
316 amino acids: PaperBLAST, CDD, Compare to cluster

B2Y0K4 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Zea mays
PFams: Trp_syntA, His_biosynth
319 amino acids: PaperBLAST, CDD, Compare to cluster

TRPA1_ARATH / O22765 Tryptophan synthase alpha chain; Indole synthase; Indole-3-glycerol-phosphate lyase; EC 4.2.1.20; EC 4.1.2.8 from Arabidopsis thaliana (Mouse-ear cress)
O22765 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Arabidopsis thaliana
PFams: Trp_syntA, His_biosynth
275 amino acids: PaperBLAST, CDD, Compare to cluster

b1260 tryptophan synthase subunit α (EC 4.1.2.8; EC 4.2.1.20) from Escherichia coli K-12 substr. MG1655
P0A877 tryptophan synthase subunit α (EC 4.1.2.8) from Escherichia coli (strain K12)
P0A877 tryptophan synthase (EC 4.2.1.20) from Escherichia coli
PFams: Trp_syntA
268 amino acids: PaperBLAST, CDD, Compare to cluster

P42390 indole-3-glycerol phosphate lyase (EC 4.1.2.8) from Zea mays
TRPA_MAIZE / P42390 Indole-3-glycerol phosphate lyase, chloroplastic; Benzoxazineless 1; Indole synthase; Tryptophan synthase alpha chain; EC 4.1.2.8; EC 4.2.1.20 from Zea mays (Maize)
P42390 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Zea mays
PFams: Trp_syntA, His_biosynth
347 amino acids: PaperBLAST, CDD, Compare to cluster

Q7Y1I9 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Oryza sativa
PFams: Trp_syntA, His_biosynth
324 amino acids: PaperBLAST, CDD, Compare to cluster

Q9FQ77 indole-3-glycerol-phosphate lyase (EC 4.1.2.8) from Zea mays
PFams: Trp_syntA, His_biosynth
339 amino acids: PaperBLAST, CDD, Compare to cluster

TRPA2_ARATH / Q42529 Tryptophan synthase alpha chain, chloroplastic; Indole-3-glycerol-phosphate lyase, chloroplastic; Protein TRYPTOPHAN-REQUIRING 3; EC 4.2.1.20; EC 4.1.2.8 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Trp_syntA, His_biosynth
312 amino acids: PaperBLAST, CDD, Compare to cluster

P50908 α subunit of tryptophan synthase (EC 4.1.2.8) from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
PFams: Trp_syntA, BtpA
239 amino acids: PaperBLAST, CDD, Compare to cluster

Q9YGA9 tryptophan synthase subunit α (EC 4.1.2.8) from Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Q9YGA9 tryptophan synthase (subunit 1/2) (EC 4.2.1.20) from Thermococcus kodakarensis
PFams: Trp_syntA, Ribul_P_3_epim, His_biosynth
Heteromeric, 251 amino acids: PaperBLAST, CDD, Compare to cluster