PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for EC 6.3.1.1 as complete word(s)

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Found 4 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 2 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 330-351 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q57WT9 aspartate-ammonia ligase (EC 6.3.1.1) from Trypanosoma brucei brucei
PFams: AsnA
351 amino acids: PaperBLAST, CDD, Compare to cluster

b3744 asparagine synthetase A (EC 6.3.1.1) from Escherichia coli K-12 substr. MG1655
P00963 asparagine synthetase A (EC 6.3.1.1) from Escherichia coli (strain K12)
ASNA_ECOLI / P00963 Aspartate--ammonia ligase; Asparagine synthetase A; EC 6.3.1.1 from Escherichia coli (strain K12)
PFams: AsnA
330 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

b0674 asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli K-12 substr. MG1655
P22106 asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli (strain K12)
ASNB_ECOLI / P22106 Asparagine synthetase B [glutamine-hydrolyzing]; AS-B; EC 6.3.5.4 from Escherichia coli (strain K12)
P22106 asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Escherichia coli
CH_002444 asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 from Escherichia coli
PFams: GATase_6, GATase_7, DUF3700, Asn_synthase, Asn_synthase
554 amino acids: PaperBLAST, CDD

Q9V228 asparagine-tRNA ligase (EC 6.1.1.22); aspartate-ammonia ligase (EC 6.3.1.1) from Pyrococcus abyssi
PFams: tRNA-synt_2
294 amino acids: PaperBLAST, CDD