PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for carbamoyl-phosphate synthase%small as complete word(s)

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Found 5 characterized proteins with matching descriptions. 3 of these are heteromeric.

Fetched 5 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 364-430 amino acids (3/5 heteromeric)

The first sequence in each cluster is the seed.

CARA_SCHPO / O60060 Carbamoyl-phosphate synthase arginine-specific small chain; CPS-A; Arginine-specific carbamoyl-phosphate synthetase, glutamine chain; EC 6.3.5.5 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
GI|3116139 arginine specific carbamoyl-phosphate synthase subunit Arg5 (predicted) from Schizosaccharomyces pombe
PFams: CPSase_sm_chain, GATase
415 amino acids: PaperBLAST, CDD, Compare to cluster

P07258 carbamoyl phosphate synthetase (EC 6.3.5.5) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CARA_YEAST / P07258 Carbamoyl-phosphate synthase arginine-specific small chain; CPS-A; Arginine-specific carbamoyl-phosphate synthetase, glutamine chain; EC 6.3.5.5 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: CPSase_sm_chain, GATase
Heteromeric, 411 amino acids: PaperBLAST, CDD, Compare to cluster

b0032 carbamoyl phosphate synthetase subunit α (EC 6.3.5.5) from Escherichia coli K-12 substr. MG1655
P0A6F1 carbamoyl-phosphate synthetase small subunit (EC 6.3.5.5) from Escherichia coli (strain K12)
CARA_ECOLI / P0A6F1 Carbamoyl-phosphate synthase small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 from Escherichia coli (strain K12)
PFams: CPSase_sm_chain, GATase, Peptidase_C26
Heteromeric, 382 amino acids: PaperBLAST, CDD, Compare to cluster

P25993 pyrimidine-specific carbamoyl-phosphate synthetase (small subunit, glutaminase subunit) (EC 6.3.5.5) from Bacillus subtilis (strain 168)
CARA_BACSU / P25993 Carbamoyl-phosphate synthase pyrimidine-specific small chain; Carbamoyl-phosphate synthetase glutamine chain; EC 6.3.5.5 from Bacillus subtilis (strain 168)
PFams: CPSase_sm_chain, GATase
Heteromeric, 364 amino acids: PaperBLAST, CDD, Compare to cluster

CARA_ARATH / Q9LVW7 Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 from Arabidopsis thaliana (Mouse-ear cress)
PFams: CPSase_sm_chain, GATase, Peptidase_C26
430 amino acids: PaperBLAST, CDD, Compare to cluster