Clusters of Characterized Proteins

GapMind for Amino acid biosynthesis

Clusters of Characterized Proteins

Clustering the characterized proteins for argD'B (N-succinylornithine aminotransferase) in L-arginine biosynthesis

Or see other characterized proteins similar to argD'B

Or see all steps for L-arginine biosynthesis

Or cluster curated proteins matching a keyword

Definition of argD'B

Curated proteins or TIGRFams with EC 2.6.1.81
UniProt sequence Q8A1A8: SubName: Full=Acetylornithine aminotransferase {ECO:0000313|EMBL:AAO78863.1};
UniProt sequence L0G5F2_ECHVK: SubName: Full=Ornithine/acetylornithine aminotransferase {ECO:0000313|EMBL:AGA80060.1};
Ignore hits to items matching EC 2.6.1.11 when looking for 'other' hits
Comment: N-succinylglutamate semialdehyde => N-succinylornithine. Some Bacteroides hvae a diverged argD-like gene, i.e. BT3758 (Q8A1A8) or Echvi_3848 (L0G5F2_ECHVK), which are auxotrophic and cofit with other arg genes. Note that this is the same reaction as found in arginine degradation by the arginine succinyltransferase (AST) pathway

Fetched 10 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 10 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 373-408 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A140N9B6 succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD, Compare to cluster

O30508 Succinylornithine transaminase/acetylornithine aminotransferase; ACOAT; SOAT; Succinylornithine aminotransferase; EC 2.6.1.11; EC 2.6.1.81
O30508 succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD, Compare to cluster

SUCCORNTRANSAM-MONOMER succinylornithine transaminase (EC 2.6.1.81; EC 2.6.1.11)
P77581 Succinylornithine transaminase; SOAT; Carbon starvation protein C; Succinylornithine aminotransferase; EC 2.6.1.81
SUCCORNTRANSAM-MONOMER succinylornithine transaminase (EC 2.6.1.81; EC 2.6.1.11)
CH_002469 succinylornithine transaminase; EC 2.6.1.81
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZPV2 Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81
PFams: Aminotran_3, Aminotran_1_2
408 amino acids: PaperBLAST, CDD, Compare to cluster

L0G5F2_ECHVK Ornithine/acetylornithine aminotransferase
381 amino acids: PaperBLAST, CDD, Compare to cluster

Q8A1A8 Acetylornithine aminotransferase
373 amino acids: PaperBLAST, CDD, Compare to cluster

Koxy:BWI76_RS11670 Succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3
406 amino acids: PaperBLAST, CDD, Compare to cluster

Marino:GFF3099 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] (from HMM only)
PFams: Aminotran_3
404 amino acids: PaperBLAST, CDD, Compare to cluster

WCS417:GFF4238 Succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD, Compare to cluster

pseudo1_N1B4:Pf1N1B4_3440 Succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3
406 amino acids: PaperBLAST, CDD, Compare to cluster