GapMind for Amino acid biosynthesis

 

Other Characterized Proteins Similar to argD'B

Finding the characterized proteins for argD'B (N-succinylornithine aminotransferase) in L-arginine biosynthesis

Or see clustering for step argD'B

Or see all steps for L-arginine biosynthesis

Or cluster curated proteins matching a keyword

Definition of argD'B

Fetched 10 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 8 other characterized sequences. (Found 16 hits including self hits.)

Removing ignored items reduces this to 2 close sequences.

There are also 1 HMM-only high-coverage hits.

Close sequences

(Sequences that are similar to these will not be high-confidence candidates for argD'B.)

azobra:AZOBR_RS19025 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
PFams: Aminotran_3
389 amino acids: PaperBLAST, CDD, reanno::azobra:AZOBR_RS19025
44% identical to

WCS417:GFF4238 Succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD

Q93R93 [LysW]-aminoadipate semialdehyde transaminase; EC 2.6.1.-
PFams: Aminotran_3
395 amino acids: PaperBLAST, CDD, SwissProt::Q93R93
42% identical to

O30508 Succinylornithine transaminase/acetylornithine aminotransferase; ACOAT; SOAT; Succinylornithine aminotransferase; EC 2.6.1.11; EC 2.6.1.81
O30508 succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD

HMM-only sequences

(Since these sequences' annotations are outside the definition for argD'B, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

Marino:GFF3099 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
PFams: Aminotran_3
404 amino acids: PaperBLAST, CDD

Close but ignored sequences

(Sequences that are similar to these will still be high-confidence candidates for argD'B.)

ACETYLORNTRANSAM-MONOMER N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17)
P18335 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17
ACETYLORNTRANSAM-MONOMER N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD, SwissProt::P18335
66% identical to

O30508 Succinylornithine transaminase/acetylornithine aminotransferase; ACOAT; SOAT; Succinylornithine aminotransferase; EC 2.6.1.11; EC 2.6.1.81
O30508 succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD

P40732 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17
PFams: Aminotran_3, Aminotran_1_2
405 amino acids: PaperBLAST, CDD, SwissProt::P40732
65% identical to

O30508 Succinylornithine transaminase/acetylornithine aminotransferase; ACOAT; SOAT; Succinylornithine aminotransferase; EC 2.6.1.11; EC 2.6.1.81
O30508 succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD

A8J933 acetylornithine transaminase (EC 2.6.1.11)
PFams: Aminotran_3
460 amino acids: PaperBLAST, CDD, BRENDA::A8J933
44% identical to

Q8ZPV2 Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81
PFams: Aminotran_3, Aminotran_1_2
408 amino acids: PaperBLAST, CDD

Q9M8M7 Acetylornithine aminotransferase, chloroplastic/mitochondrial; ACOAT; Acetylornithine transaminase; AOTA; Protein HOPW1-1-INTERACTING 1; EC 2.6.1.11
PFams: Aminotran_3
457 amino acids: PaperBLAST, CDD, SwissProt::Q9M8M7
43% identical to

WCS417:GFF4238 Succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD

CH_124889 acetylornithine aminotransferase; EC 2.6.1.11
PFams: Aminotran_3
441 amino acids: PaperBLAST, CDD, CharProtDB::CH_124889
42% identical to

Q8ZPV2 Succinylornithine transaminase; SOAT; Succinylornithine aminotransferase; EC 2.6.1.81
PFams: Aminotran_3, Aminotran_1_2
408 amino acids: PaperBLAST, CDD

P18544 Acetylornithine aminotransferase, mitochondrial; ACOAT; EC 2.6.1.11
PFams: Aminotran_3
423 amino acids: PaperBLAST, CDD, SwissProt::P18544
40% identical to

WCS417:GFF4238 Succinylornithine transaminase (EC 2.6.1.81)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD