Clusters of Characterized Proteins

Clustering the characterized proteins for carA (carbamoyl phosphate synthase subunit alpha) in L-arginine biosynthesis

Or see other characterized proteins similar to carA

Or see all steps for L-arginine biosynthesis

Or cluster curated proteins matching a keyword

Definition of carA

• Curated proteins matching carbamoyl-phosphate synthase%small
• Ignore hits to items matching EC 6.3.5.5 when looking for 'other' hits
• Ignore hits to items matching EC 6.3.4.16 when looking for 'other' hits
• HMM TIGR01368
• Comment: This could obtain the amino group from glutamine (EC 6.3.5.5) or from ammonia (EC 6.3.4.16)

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 411-430 amino acids (not heteromeric)

O60060 Carbamoyl-phosphate synthase arginine-specific small chain; CPS-A; Arginine-specific carbamoyl-phosphate synthetase, glutamine chain; EC 6.3.5.5
CH_124801 arginine specific carbamoyl-phosphate synthase subunit Arg5 (predicted)
PFams: CPSase_sm_chain, GATase
415 amino acids: PaperBLAST, CDD, Compare to cluster

P07258 Carbamoyl-phosphate synthase arginine-specific small chain; CPS-A; Arginine-specific carbamoyl-phosphate synthetase, glutamine chain; EC 6.3.5.5
PFams: CPSase_sm_chain, GATase
411 amino acids: PaperBLAST, CDD, Compare to cluster

Q9LVW7 Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5
PFams: CPSase_sm_chain, GATase, Peptidase_C26
430 amino acids: PaperBLAST, CDD, Compare to cluster