Clusters of Characterized Proteins

Clustering the characterized proteins for carB (carbamoyl phosphate synthase subunit beta) in L-arginine biosynthesis

Or see other characterized proteins similar to carB

Or see all steps for L-arginine biosynthesis

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Definition of carB

• Curated proteins matching carbamoyl-phosphate synthetase%large
• Curated proteins matching carbamoyl-phosphate synthase%large
• Ignore hits to items matching EC 6.3.5.5 when looking for 'other' hits
• Ignore hits to items matching EC 6.3.4.16 when looking for 'other' hits
• HMM TIGR01369

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 1071-1187 amino acids (3/4 heteromeric)

b0033 carbamoyl phosphate synthetase subunit β (EC 6.3.5.5) from Escherichia coli K-12 substr. MG1655
P00968 carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli (strain K12)
P00968 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) from Escherichia coli
CH_002132 carbamoyl phosphate synthase, large subunit; EC 6.3.5.5 from Escherichia coli
PFams: CPSase_L_D2, CPSase_L_D3, CPSase_L_D2, ATP-grasp_3, ATP-grasp, Dala_Dala_lig_C, MGS
Heteromeric, 1073 amino acids: PaperBLAST, CDD, Compare to cluster

P03965 carbamoyl phosphate synthetase (EC 6.3.5.5) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
CARB_YEAST / P03965 Carbamoyl-phosphate synthase arginine-specific large chain; Arginine-specific carbamoyl-phosphate synthetase, ammonia chain; EC 6.3.5.5 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS
Heteromeric, 1118 amino acids: PaperBLAST, CDD, Compare to cluster

P25994 pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis (strain 168)
CARB_BACSU / P25994 Carbamoyl-phosphate synthase pyrimidine-specific large chain; Carbamoyl-phosphate synthetase ammonia chain; EC 6.3.5.5 from Bacillus subtilis (strain 168)
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, ATP-grasp_3, CPSase_L_D2, GARS_A, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS
Heteromeric, 1071 amino acids: PaperBLAST, CDD, Compare to cluster

CARB_ARATH / Q42601 Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 from Arabidopsis thaliana (Mouse-ear cress)
PFams: CPSase_L_D2, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS
1187 amino acids: PaperBLAST, CDD, Compare to cluster