GapMind for Amino acid biosynthesis


Clusters of Characterized Proteins

Clustering the characterized proteins for carB (carbamoyl phosphate synthase subunit beta) in L-arginine biosynthesis

Or see other characterized proteins similar to carB

Or see all steps for L-arginine biosynthesis

Or cluster curated proteins matching a keyword

Definition of carB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 1073-1187 amino acids (1/3 heteromeric)

The first sequence in each cluster is the seed.

CARBPSYN-LARGE carbamoyl phosphate synthetase subunit β (EC
P00968 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC
CARBPSYN-LARGE carbamoyl phosphate synthetase, β chain (EC
CH_002132 carbamoyl phosphate synthase, large subunit; EC
PFams: CPSase_L_D2, ATP-grasp, CPSase_L_D3, CPSase_L_D2, ATP-grasp_3, ATP-grasp, ATPgrasp_Ter, MGS
Heteromeric, 1073 amino acids: PaperBLAST, CDD, Compare to cluster

P03965 Carbamoyl-phosphate synthase arginine-specific large chain; Arginine-specific carbamoyl-phosphate synthetase, ammonia chain; EC
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS
1118 amino acids: PaperBLAST, CDD, Compare to cluster

Q42601 Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 6; EC
PFams: CPSase_L_D2, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS
1187 amino acids: PaperBLAST, CDD, Compare to cluster