GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for carB (carbamoyl phosphate synthase subunit beta) in L-arginine biosynthesis

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Definition of carB

Fetched 3 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 3 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 1073-1187 amino acids (1/3 heteromeric)

The first sequence in each cluster is the seed.

CARBPSYN-LARGE carbamoyl phosphate synthetase subunit β (EC 6.3.5.5)
P00968 carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5)
CARBPSYN-LARGE carbamoyl phosphate synthetase, β chain (EC 6.3.5.5)
CH_002132 carbamoyl phosphate synthase, large subunit; EC 6.3.5.5
PFams: CPSase_L_D2, ATP-grasp, CPSase_L_D3, CPSase_L_D2, ATP-grasp_3, ATP-grasp, ATPgrasp_Ter, MGS
Heteromeric, 1073 amino acids: PaperBLAST, CDD, Compare to cluster

P03965 Carbamoyl-phosphate synthase arginine-specific large chain; Arginine-specific carbamoyl-phosphate synthetase, ammonia chain; EC 6.3.5.5
PFams: CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, ATPgrasp_Ter, MGS
1118 amino acids: PaperBLAST, CDD, Compare to cluster

Q42601 Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 6; EC 6.3.5.5
PFams: CPSase_L_D2, CPSase_L_D3, CPSase_L_D2, ATP-grasp, Dala_Dala_lig_C, MGS
1187 amino acids: PaperBLAST, CDD, Compare to cluster