GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aroB (3-dehydroquinate synthase) in chorismate biosynthesis

Or see other characterized proteins similar to aroB

Or see all steps for chorismate biosynthesis

Or cluster curated proteins matching a keyword

Definition of aroB

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 335-445 amino acids (not heteromeric)

P56081 3-dehydroquinate synthase; DHQS; EC 4.2.3.4
PFams: Fe-ADH_2, DHQ_synthase
343 amino acids: PaperBLAST, CDD, Compare to cluster

MONOMER-19685 2-epi-valiolone synthase (EC 4.2.3.155) (from HMM only)
C6WFL3 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155
C6WFL3 2-epi-valiolone synthase (EC 4.2.3.155)
PFams: Fe-ADH_2, DHQ_synthase
382 amino acids: PaperBLAST, CDD, Compare to cluster

AROB-MONOMER 3-dehydroquinate synthase (EC 4.2.3.4)
AROB-MONOMER 3-dehydroquinate synthase (EC 4.2.3.4)
P07639 3-dehydroquinate synthase; DHQS; EC 4.2.3.4
P07639 3-dehydroquinate synthase (EC 4.2.3.4)
PFams: Fe-ADH_2, Fe-ADH, DHQ_synthase
362 amino acids: PaperBLAST, CDD, Compare to cluster

P9WPX9 3-dehydroquinate synthase (EC 4.2.3.4)
PFams: Fe-ADH, Fe-ADH_2, DHQ_synthase
362 amino acids: PaperBLAST, CDD, Compare to cluster

Q8U0A8 3-dehydroquinate synthase (EC 4.2.3.4)
PFams: Fe-ADH_2, DHQ_synthase
335 amino acids: PaperBLAST, CDD, Compare to cluster

Q8RU74 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4
PFams: Fe-ADH, Fe-ADH_2, DHQ_synthase
442 amino acids: PaperBLAST, CDD, Compare to cluster

U3KRF2 3-dehydroquinate synthase, chloroplastic; EC 4.2.3.4
PFams: Fe-ADH, Fe-ADH_2, DHQ_synthase
445 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 1583-1588 amino acids (not heteromeric)

P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25
P07547 shikimate dehydrogenase (EC 1.1.1.25)
CH_122161 pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4
PFams: Fe-ADH_2, DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, SDH_C
1583 amino acids: PaperBLAST, CDD, Compare to cluster

YDR127W-MONOMER pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10)
P08566 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25
PFams: DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
1588 amino acids: PaperBLAST, CDD, Compare to cluster