GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for aroD (3-dehydroquinate dehydratase) in chorismate biosynthesis

Or see other characterized proteins similar to aroD

Or see all steps for chorismate biosynthesis

Or cluster curated proteins matching a keyword

Definition of aroD

Fetched 28 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 28 of these sequences

Found 4 clusters of similar sequences. Another 1 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 218-272 amino acids (not heteromeric)

P58687 3-dehydroquinate dehydratase; 3-dehydroquinase; DHQD; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
P58687 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_I
252 amino acids: PaperBLAST, CDD, Compare to cluster

AROD-MONOMER 3-dehydroquinate dehydratase (EC 4.2.1.10)
P05194 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
AROD-MONOMER 3-dehydroquinate dehydratase (EC 4.2.1.10)
CH_002910 3-dehydroquinate dehydratase; EC 4.2.1.10
PFams: DHquinase_I
252 amino acids: PaperBLAST, CDD, Compare to cluster

O66440 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
PFams: DHquinase_I
219 amino acids: PaperBLAST, CDD, Compare to cluster

P24670 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
PFams: DHquinase_I
252 amino acids: PaperBLAST, CDD, Compare to cluster

P36923 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
PFams: DHquinase_I
253 amino acids: PaperBLAST, CDD, Compare to cluster

Q186A6 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
PFams: DHquinase_I
255 amino acids: PaperBLAST, CDD, Compare to cluster

Q59087 Catabolic 3-dehydroquinate dehydratase; 3-dehydroquinase; EC 4.2.1.10
MONOMER-33 catabolic 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_I
272 amino acids: PaperBLAST, CDD, Compare to cluster

Q5KY94 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
PFams: DHquinase_I
257 amino acids: PaperBLAST, CDD, Compare to cluster

Q6GII7 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
PFams: DHquinase_I
238 amino acids: PaperBLAST, CDD, Compare to cluster

Q6LXF7 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
MONOMER-14591 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_I
218 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 145-167 amino acids (not heteromeric)

P15474 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10
P15474 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_II
157 amino acids: PaperBLAST, CDD, Compare to cluster

P9WPX7 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10
P9WPX7 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_II
147 amino acids: PaperBLAST, CDD, Compare to cluster

Q48255 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10
Q48255 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_II
167 amino acids: PaperBLAST, CDD, Compare to cluster

W6JLW3 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_II
160 amino acids: PaperBLAST, CDD, Compare to cluster

P05147 Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; EC 4.2.1.10
CH_122158 catabolic 3-dehydroquinase
PFams: DHquinase_II
153 amino acids: PaperBLAST, CDD, Compare to cluster

P43877 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10
PFams: DHquinase_II
154 amino acids: PaperBLAST, CDD, Compare to cluster

P54517 3-dehydroquinate dehydratase; 3-dehydroquinase; Type II DHQase; EC 4.2.1.10
PFams: DHquinase_II
148 amino acids: PaperBLAST, CDD, Compare to cluster

Q59Z17 Catabolic 3-dehydroquinase; cDHQase; 3-dehydroquinate dehydratase; EC 4.2.1.10
PFams: DHquinase_II
146 amino acids: PaperBLAST, CDD, Compare to cluster

MONOMER-15335 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_II
145 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 519-603 amino acids (not heteromeric)

A0A168S2B8 shikimate dehydrogenase (EC 1.1.1.25) (from HMM only)
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
519 amino acids: PaperBLAST, CDD, Compare to cluster

A0A168S2G5 shikimate dehydrogenase (EC 1.1.1.25) (from HMM only)
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
531 amino acids: PaperBLAST, CDD, Compare to cluster

A0A168S2H6 shikimate dehydrogenase (EC 1.1.1.25) (from HMM only)
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, F420_oxidored, SDH_C
531 amino acids: PaperBLAST, CDD, Compare to cluster

Q6PUF9 shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, F420_oxidored
569 amino acids: PaperBLAST, CDD, Compare to cluster

Q6PUG0 shikimate dehydrogenase (EC 1.1.1.25); 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_I, Shikimate_dh_N, SDH_C
521 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SQT8 Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic; DHQ-SDH protein; DHQase-SORase; Protein EMBRYO DEFECTIVE 3004; EC 4.2.1.10; EC 1.1.1.25
Q9SQT8 3-dehydroquinate dehydratase (EC 4.2.1.10)
AT3G06350-MONOMER shikimate dehydrogenase (EC 1.1.1.25; EC 4.2.1.10)
PFams: DHquinase_I, Shikimate_dh_N, Shikimate_DH, IlvN, F420_oxidored, FAD_binding_2, SDH_C
603 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 1583-1588 amino acids (not heteromeric)

P07547 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25
P07547 shikimate dehydrogenase (EC 1.1.1.25)
CH_122161 pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4
PFams: Fe-ADH_2, DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, SDH_C
1583 amino acids: PaperBLAST, CDD, Compare to cluster

P08566 Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25
YDR127W-MONOMER pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10)
PFams: DHQ_synthase, EPSP_synthase, SKI, DHquinase_I, Shikimate_dh_N, Shikimate_DH, SDH_C
1588 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/1 heteromeric)

O30011 3-dehydroquinate dehydratase; 3-dehydroquinase; Type I DHQase; Type I dehydroquinase; DHQ1; EC 4.2.1.10
O30011 3-dehydroquinate dehydratase (EC 4.2.1.10)
PFams: DHquinase_I
196 amino acids: PaperBLAST, CDD
(similar to SwissProt::O66440 from Cluster 1, but similarity to seed sequence is below thresholds)