Clusters of Characterized Proteins

GapMind for Amino acid biosynthesis

Clusters of Characterized Proteins

Clustering the characterized proteins for glyA (serine hydroxymethyltransferase) in glycine biosynthesis

Or see other characterized proteins similar to glyA

Or see all steps for glycine biosynthesis

Or cluster curated proteins matching a keyword

Definition of glyA

Curated proteins or TIGRFams with EC 2.1.2.1
Curated proteins matching Serine hydroxymethyltransferase
Comment: Some methanogens use tetrahydromethanopterin instead of tetrahydrofolate as the folate carrier, which is annotated as "Serine hydroxymethyltransferase" but with a different EC number.

Fetched 44 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 44 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 407-529 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

A0A069BAT4 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_5, Beta_elim_lyase, Cys_Met_Meta_PP, Aminotran_1_2
415 amino acids: PaperBLAST, CDD, Compare to cluster

A1SUU0 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Beta_elim_lyase, OKR_DC_1, Aminotran_1_2
421 amino acids: PaperBLAST, CDD, Compare to cluster

A5K8L9 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
442 amino acids: PaperBLAST, CDD, Compare to cluster

A8GTI9 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2
420 amino acids: PaperBLAST, CDD, Compare to cluster

A9LDD9 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
492 amino acids: PaperBLAST, CDD, Compare to cluster

B4ECY9 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_5, Beta_elim_lyase, Cys_Met_Meta_PP, Aminotran_1_2
415 amino acids: PaperBLAST, CDD, Compare to cluster

I7H6W6 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Beta_elim_lyase, Aminotran_1_2, DegT_DnrJ_EryC1
427 amino acids: PaperBLAST, CDD, Compare to cluster

L7Y8B0 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2, Cys_Met_Meta_PP, DegT_DnrJ_EryC1
417 amino acids: PaperBLAST, CDD, Compare to cluster

P0A2E1 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
P0A2E1 glycine hydroxymethyltransferase (EC 2.1.2.1)
CH_024000 serine hydroxymethyltransferase; EC 2.1.2.1
PFams: SHMT, Aminotran_1_2
417 amino acids: PaperBLAST, CDD, Compare to cluster

GLYOHMETRANS-MONOMER serine hydroxymethyltransferase (EC 2.1.2.1)
P0A825 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
P0A825 glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48)
GLYOHMETRANS-MONOMER serine hydroxymethyltransferase (EC 2.1.2.1)
CH_024268 serine hydroxymethyltransferase; EC 2.1.2.1
PFams: SHMT, Aminotran_5, Beta_elim_lyase, Aminotran_1_2
417 amino acids: PaperBLAST, CDD, Compare to cluster

P34896 Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
P34896 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2
483 amino acids: PaperBLAST, CDD, Compare to cluster

P34897 Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
P34897 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
504 amino acids: PaperBLAST, CDD, Compare to cluster

P9WGI7 Serine hydroxymethyltransferase 2; SHM2; SHMT 2; Serine methylase 2; EC 2.1.2.1
P9WGI7 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2, DegT_DnrJ_EryC1
425 amino acids: PaperBLAST, CDD, Compare to cluster

P9WGI9 Serine hydroxymethyltransferase 1; SHM1; SHMT 1; Serine methylase 1; EC 2.1.2.1
P9WGI9 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, DegT_DnrJ_EryC1
438 amino acids: PaperBLAST, CDD, Compare to cluster

Q2TL58 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
481 amino acids: PaperBLAST, CDD, Compare to cluster

Q46A52 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
Q46A52 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
412 amino acids: PaperBLAST, CDD, Compare to cluster

Q58992 Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49
Q58992 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2
429 amino acids: PaperBLAST, CDD, Compare to cluster

Q5HE87 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
Q5HE87 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Beta_elim_lyase, Aminotran_1_2
412 amino acids: PaperBLAST, CDD, Compare to cluster

Q5SI56 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
Q5SI56 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2, DegT_DnrJ_EryC1
407 amino acids: PaperBLAST, CDD, Compare to cluster

Q75BQ6 Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
Q75BQ6 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Beta_elim_lyase
469 amino acids: PaperBLAST, CDD, Compare to cluster

Q7SIB6 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2, Beta_elim_lyase
419 amino acids: PaperBLAST, CDD, Compare to cluster

Q7SXN1 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
481 amino acids: PaperBLAST, CDD, Compare to cluster

Q86LS9 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
480 amino acids: PaperBLAST, CDD, Compare to cluster

Q94JQ3 Serine hydroxymethyltransferase 3, chloroplastic; AtSHMT3; Glycine hydroxymethyltransferase 3; Serine methylase 3; EC 2.1.2.1
Q94JQ3 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Beta_elim_lyase
529 amino acids: PaperBLAST, CDD, Compare to cluster

R9YJZ9 glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2, Aminotran_5, Beta_elim_lyase
417 amino acids: PaperBLAST, CDD, Compare to cluster

P24531 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
CH_121457 serine hydroxymethyltransferase; EC 2.1.2.1
PFams: SHMT, Beta_elim_lyase, DegT_DnrJ_EryC1
414 amino acids: PaperBLAST, CDD, Compare to cluster

O13426 Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; SHMII; Serine methylase; EC 2.1.2.1
CH_122743 serine hydroxymethyltransferase; EC 2.1.2.1
PFams: SHMT, Aminotran_1_2
470 amino acids: PaperBLAST, CDD, Compare to cluster

D3DKC4 Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48
PFams: SHMT, Beta_elim_lyase, Aminotran_1_2
427 amino acids: PaperBLAST, CDD, Compare to cluster

O23254 Serine hydroxymethyltransferase 4; AtSHMT4; Glycine hydroxymethyltransferase 4; Serine methylase 4; EC 2.1.2.1
PFams: SHMT
471 amino acids: PaperBLAST, CDD, Compare to cluster

O27433 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.-
PFams: SHMT, Aminotran_1_2
423 amino acids: PaperBLAST, CDD, Compare to cluster

P07511 Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
PFams: SHMT, Aminotran_1_2
484 amino acids: PaperBLAST, CDD, Compare to cluster

P35623 Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
PFams: SHMT
484 amino acids: PaperBLAST, CDD, Compare to cluster

P37291 Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
YLR058C-MONOMER serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2
469 amino acids: PaperBLAST, CDD, Compare to cluster

P37292 Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
YBR263W-MONOMER serine hydroxymethyltransferase, mitochondrial (EC 2.1.2.1)
PFams: SHMT
490 amino acids: PaperBLAST, CDD, Compare to cluster

P39148 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1
PFams: SHMT, Beta_elim_lyase, Aminotran_1_2
415 amino acids: PaperBLAST, CDD, Compare to cluster

P50431 Serine hydroxymethyltransferase, cytosolic; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
PFams: SHMT
478 amino acids: PaperBLAST, CDD, Compare to cluster

Q10104 Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
PFams: SHMT
488 amino acids: PaperBLAST, CDD, Compare to cluster

Q3JGP5 Serine hydroxymethyltransferase 2; SHMT 2; Serine methylase 2; EC 2.1.2.1
PFams: SHMT, DegT_DnrJ_EryC1
424 amino acids: PaperBLAST, CDD, Compare to cluster

Q758F0 Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
PFams: SHMT
497 amino acids: PaperBLAST, CDD, Compare to cluster

Q94C74 Serine hydroxymethyltransferase 2, mitochondrial; AtSHMT2; Glycine hydroxymethyltransferase 2; Serine methylase 2; EC 2.1.2.1
PFams: SHMT
517 amino acids: PaperBLAST, CDD, Compare to cluster

Q9CZN7 Serine hydroxymethyltransferase, mitochondrial; SHMT; Glycine hydroxymethyltransferase; Serine methylase; EC 2.1.2.1
PFams: SHMT
504 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SZJ5 Serine hydroxymethyltransferase 1, mitochondrial; AtSHMT1; Glycine hydroxymethyltransferase 1; Serine Transhydroxymethyltransferase; STM; Serine methylase 1; EC 2.1.2.1
AT4G37930-MONOMER serine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT
517 amino acids: PaperBLAST, CDD, Compare to cluster

Q9UWT5 Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.-
PFams: SHMT, Aminotran_1_2, Beta_elim_lyase
433 amino acids: PaperBLAST, CDD, Compare to cluster

pseudo13_GW456_L13:PfGW456L13_2685 Glycine hydroxymethyltransferase (EC 2.1.2.1)
PFams: SHMT, Aminotran_1_2, Beta_elim_lyase, DegT_DnrJ_EryC1
418 amino acids: PaperBLAST, CDD, Compare to cluster