GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dapB (4-hydroxy-tetrahydrodipicolinate reductase) in L-lysine biosynthesis

Or see other characterized proteins similar to dapB

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Definition of dapB

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 5 of these sequences

Found 1 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 216-273 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

Q9X1K8 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8
PFams: DapB_N, DapB_C
216 amino acids: PaperBLAST, CDD, Compare to cluster

Q5HG24 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)
PFams: DapB_N, DapB_C
240 amino acids: PaperBLAST, CDD, Compare to cluster

DIHYDROPICRED-MONOMER 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)
P04036 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8
DIHYDROPICRED-MONOMER 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)
CH_002128 dihydrodipicolinate reductase; EC 1.3.1.26
PFams: DapB_N, DapB_C
273 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1X9Z7Q6_9SPHI 4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102}; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102}
244 amino acids: PaperBLAST, CDD, Compare to cluster

L0G028_ECHVK Dihydrodipicolinate reductase
240 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

P9WP23 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8
P9WP23 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)
PFams: DapB_N, DapB_C
245 amino acids: PaperBLAST, CDD

Q9FJ82 Dihydrodipicolinate reductase-like protein CRR1, chloroplastic; 4-hydroxy-tetrahydrodipicolinate reductase 3; HTPA reductase 3; Protein CHLORORESPIRATORY REDUCTION 1 (from HMM only)
PFams: DapB_N, DapB_C
298 amino acids: PaperBLAST, CDD