GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dapC (N-succinyldiaminopimelate aminotransferase) in L-lysine biosynthesis

Or see other characterized proteins similar to dapC

Or see all steps for L-lysine biosynthesis

Or cluster curated proteins matching a keyword

Definition of dapC

Fetched 22 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 18 of these sequences

Found 3 clusters of similar sequences. Another 4 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 361-430 amino acids (not heteromeric)

Q59196 Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52
Q59196 phosphoserine transaminase (EC 2.6.1.52)
PFams: Aminotran_5
362 amino acids: PaperBLAST, CDD, Compare to cluster

Q9RME2 Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52
Q9RME2 phosphoserine transaminase (EC 2.6.1.52)
PFams: Aminotran_5
361 amino acids: PaperBLAST, CDD, Compare to cluster

Q9Y617 Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52
Q9Y617 glycine transaminase (EC 2.6.1.4); phosphoserine transaminase (EC 2.6.1.52)
PFams: Aminotran_5
370 amino acids: PaperBLAST, CDD, Compare to cluster

V9NC98 phosphoserine transaminase (EC 2.6.1.52)
PFams: Aminotran_5
394 amino acids: PaperBLAST, CDD, Compare to cluster

PSERTRANSAM-MONOMER phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17)
P23721 Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52
CH_002572 phosphoserine aminotransferase; EC 2.6.1.52
PFams: Aminotran_5
362 amino acids: PaperBLAST, CDD, Compare to cluster

P10658 Phosphoserine aminotransferase; PSAT; Endometrial progesterone-induced protein; EPIP; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52
PFams: Aminotran_5
370 amino acids: PaperBLAST, CDD, Compare to cluster

P33330 Phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52
PFams: Aminotran_5
395 amino acids: PaperBLAST, CDD, Compare to cluster

Q96255 Phosphoserine aminotransferase 1, chloroplastic; AtPSAT1; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52
AT4G35630-MONOMER phosphoserine aminotransferase (EC 2.6.1.52)
PFams: Aminotran_5
430 amino acids: PaperBLAST, CDD, Compare to cluster

Q9SHP0 Phosphoserine aminotransferase 2, chloroplastic; AtPSAT2; EC 2.6.1.52
PFams: Aminotran_5
422 amino acids: PaperBLAST, CDD, Compare to cluster

Q9VAN0 Probable phosphoserine aminotransferase; PSAT; Phosphohydroxythreonine aminotransferase; EC 2.6.1.52
PFams: Aminotran_5
364 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 389-406 amino acids (not heteromeric)

ACETYLORNTRANSAM-MONOMER N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17)
P18335 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17
ACETYLORNTRANSAM-MONOMER N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD, Compare to cluster

P40732 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17
PFams: Aminotran_3, Aminotran_1_2
405 amino acids: PaperBLAST, CDD, Compare to cluster

Marino:GFF3099 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
PFams: Aminotran_3
404 amino acids: PaperBLAST, CDD, Compare to cluster

azobra:AZOBR_RS19025 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17]
PFams: Aminotran_3
389 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 359-397 amino acids (not heteromeric)

Q82IK5 succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79)
PFams: Aminotran_1_2
364 amino acids: PaperBLAST, CDD, Compare to cluster

Q8NRE6 succinyldiaminopimelate transaminase (EC 2.6.1.17)
PFams: Aminotran_1_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

Q9ZEX3 succinyldiaminopimelate transaminase (EC 2.6.1.17)
PFams: Aminotran_1_2
397 amino acids: PaperBLAST, CDD, Compare to cluster

Q3S8P9 4-dedimethylamino-4-oxo-anhydrotetracycline transaminase OxyQ; PLP-dependent aminotransferase OxyQ; Reductive transaminase oxyQ; EC 2.6.1.-
MONOMER-19941 4-dedimethylamino-4-oxo-anhydrotetracycline (from HMM only)
PFams: Aminotran_1_2
359 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/4 heteromeric)

P52878 Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52
P52878 phosphoserine transaminase (EC 2.6.1.52)
PFams: Aminotran_5
370 amino acids: PaperBLAST, CDD

P74281 phosphoserine transaminase (EC 2.6.1.52)
PFams: Aminotran_5, Cys_Met_Meta_PP
384 amino acids: PaperBLAST, CDD

P9WPZ5 Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17
P9WPZ5 succinyldiaminopimelate transaminase (EC 2.6.1.17)
PFams: Aminotran_1_2, Aminotran_5, DegT_DnrJ_EryC1, Cys_Met_Meta_PP
397 amino acids: PaperBLAST, CDD

P9WQ73 Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52
P9WQ73 phosphoserine transaminase (EC 2.6.1.52)
PFams: Aminotran_5
376 amino acids: PaperBLAST, CDD