GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dapD (tetrahydrodipicolinate succinylase) in L-lysine biosynthesis

Or see other characterized proteins similar to dapD

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Definition of dapD

Fetched 7 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 274-276 amino acids (not heteromeric)

P31852 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) from Pseudomonas amygdali pv. tabaci
PFams: THDPS_N_2, Hexapep_2, Hexapep
276 amino acids: PaperBLAST, CDD, Compare to cluster

Q8X8Y7 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) from Escherichia coli
PFams: THDPS_N_2, Hexapep_2, Hexapep
274 amino acids: PaperBLAST, CDD, Compare to cluster

b0166 tetrahydrodipicolinate succinylase (EC 2.3.1.117) from Escherichia coli K-12 substr. MG1655
P0A9D8 tetrahydrodipicolinate succinylase (EC 2.3.1.117) from Escherichia coli (strain K12)
DAPD_ECOLI / P0A9D8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Succinyl-CoA: tetrahydrodipicolinate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 from Escherichia coli (strain K12)
MB|P0A9D8 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Escherichia coli K12
PFams: THDPS_N_2, Hexapep_2, Hexapep
274 amino acids: PaperBLAST, CDD, Compare to cluster

DAPD_UNKP / P56220 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 from Unknown prokaryotic organism
PFams: THDPS_N_2, Hexapep_2, Hexapep
274 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 297-344 amino acids (not heteromeric)

DAPD_MYCTU / P9WP21 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WP21 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) from Mycobacterium tuberculosis
PFams: THDPS_M, Hexapep_2
317 amino acids: PaperBLAST, CDD, Compare to cluster

Q8NRE3 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117) from Corynebacterium glutamicum
PFams: THDPS_M, Hexapep_2
297 amino acids: PaperBLAST, CDD, Compare to cluster

DAPD_PSEAE / G3XD76 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase; EC 2.3.1.117 from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
PFams: THDPS_N, THDPS_M, Hexapep_2
344 amino acids: PaperBLAST, CDD, Compare to cluster