GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dapE (succinyl-diaminopimelate desuccinylase) in L-lysine biosynthesis

Or see other characterized proteins similar to dapE

Or see all steps for L-lysine biosynthesis

Or cluster curated proteins matching a keyword

Definition of dapE

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 9 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 375-383 amino acids (not heteromeric)

P44514 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18
P44514 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)
PFams: Peptidase_M20, M20_dimer
377 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KQ52 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18
Q9KQ52 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)
PFams: Peptidase_M20, M20_dimer
377 amino acids: PaperBLAST, CDD, Compare to cluster

MONOMER0-1981 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)
P0AED7 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18
CH_024449 succinyl-diaminopimelate desuccinylase; EC 3.5.1.18
PFams: Peptidase_M20, M20_dimer
375 amino acids: PaperBLAST, CDD, Compare to cluster

O25002 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18
PFams: Peptidase_M20, M20_dimer
383 amino acids: PaperBLAST, CDD, Compare to cluster

Q8ZN75 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; Aspartyl peptidase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18
PFams: Peptidase_M20, M20_dimer
375 amino acids: PaperBLAST, CDD, Compare to cluster

Q9JYL2 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18
PFams: Peptidase_M20, M20_dimer
381 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 354-369 amino acids (not heteromeric)

P9WHS9 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)
PFams: Peptidase_M28, Peptidase_M20, M20_dimer
354 amino acids: PaperBLAST, CDD, Compare to cluster

Q59284 succinyl-diaminopimelate desuccinylase (EC 3.5.1.18)
PFams: Peptidase_M28, Peptidase_M20, M20_dimer
369 amino acids: PaperBLAST, CDD, Compare to cluster

A0R2G4 Succinyl-diaminopimelate desuccinylase; SDAP desuccinylase; N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; EC 3.5.1.18
PFams: Peptidase_M20, M20_dimer
355 amino acids: PaperBLAST, CDD, Compare to cluster