GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for dapF (diaminopimelate epimerase) in L-lysine biosynthesis

Or see other characterized proteins similar to dapF

Or see all steps for L-lysine biosynthesis

Or cluster curated proteins matching a keyword

Definition of dapF

Fetched 8 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 8 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 274-362 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

MONOMER-18018 O-ureido-serine racemase (EC 5.1.1.19) (from HMM only)
D2Z026 O-ureido-serine racemase; EC 5.1.1.19
D2Z026 O-ureido-serine racemase (EC 5.1.1.19)
PFams: DAP_epimerase, DAP_epimerase
287 amino acids: PaperBLAST, CDD, Compare to cluster

E4NI20 diaminopimelate epimerase (EC 5.1.1.7)
PFams: DAP_epimerase, DAP_epimerase
295 amino acids: PaperBLAST, CDD, Compare to cluster

P9WP19 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7
P9WP19 diaminopimelate epimerase (EC 5.1.1.7)
PFams: DAP_epimerase, DAP_epimerase
289 amino acids: PaperBLAST, CDD, Compare to cluster

Q9LFG2 Diaminopimelate epimerase, chloroplastic; DAP epimerase; EC 5.1.1.7
Q9LFG2 diaminopimelate epimerase (EC 5.1.1.7)
PFams: DAP_epimerase, DAP_epimerase
362 amino acids: PaperBLAST, CDD, Compare to cluster

DIAMINOPIMEPIM-MONOMER diaminopimelate epimerase (EC 5.1.1.7)
P0A6K1 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7
PFams: DAP_epimerase, PhzC-PhzF, DAP_epimerase
274 amino acids: PaperBLAST, CDD, Compare to cluster

P44859 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7
PFams: DAP_epimerase, PhzC-PhzF, DAP_epimerase
274 amino acids: PaperBLAST, CDD, Compare to cluster

Q81XR2 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7
PFams: DAP_epimerase, PhzC-PhzF, DAP_epimerase
288 amino acids: PaperBLAST, CDD, Compare to cluster

Q8NP73 Diaminopimelate epimerase; DAP epimerase; PLP-independent amino acid racemase; EC 5.1.1.7
PFams: DAP_epimerase, DAP_epimerase
277 amino acids: PaperBLAST, CDD, Compare to cluster