Other Characterized Proteins Similar to dapF

Finding the characterized proteins for dapF (diaminopimelate epimerase) in L-lysine biosynthesis

Or see clustering for step dapF

Or see all steps for L-lysine biosynthesis

Or cluster curated proteins matching a keyword

Definition of dapF

• Curated proteins or TIGRFams with EC 5.1.1.7
• Predicted: UniProt sequence A0A9Q5JK70: SubName: Full=Alanine racemase {ECO:0000313|EMBL:OFQ71504.1};
• Comment: L,L-diaminopimelate to meso-diaminopimelate. A putative amino acid racemase (A0A9Q5JK70) is in a conserved operon with lysA ("dapF2" in PMC9026213); it is likely to be a diaminopimelate epimerase.

Fetched 10 sequences

Running ublast to find other characterized proteins with 40% identity and 70% coverage

Found hits to 0 other characterized sequences. (Found 9 hits including self hits.)

There are also 1 HMM-only high-coverage hits.

HMM-only sequences

(Since these sequences' annotations are outside the definition for dapF, HMM hits that are over 40% similar to these sequences will be scored as moderate confidence.)

D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae
DCSC_STRLA / D2Z026 O-ureido-serine racemase; EC 5.1.1.19 from Streptomyces lavendulae
D2Z026 O-ureido-serine racemase (EC 5.1.1.19) from Streptomyces lavendulae subsp. lavendulae
PFams: DAP_epimerase, DAP_epimerase
287 amino acids: PaperBLAST, CDD