GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for ddh (meso-diaminopimelate D-dehydrogenase) in L-lysine biosynthesis

Or see other characterized proteins similar to ddh

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Definition of ddh

Fetched 6 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 6 of these sequences

Found 1 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 299-334 amino acids (not heteromeric)

The first sequence in each cluster is the seed.

G1UII1 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16
G1UII1 diaminopimelate dehydrogenase (EC 1.4.1.16)
PFams: DapB_N, DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster

Q67PI3 diaminopimelate dehydrogenase (EC 1.4.1.16)
PFams: GFO_IDH_MocA, DAPDH_C
299 amino acids: PaperBLAST, CDD, Compare to cluster

A3DDX7 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16
PFams: F420_oxidored, DAPDH_C
334 amino acids: PaperBLAST, CDD, Compare to cluster

P04964 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16
PFams: DAPDH_C
320 amino acids: PaperBLAST, CDD, Compare to cluster

Q5L9Q6 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; EC 1.4.1.16
PFams: GFO_IDH_MocA, Semialdhyde_dh, NAD_binding_3, DAPDH_C
299 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KWR0 Meso-diaminopimelate D-dehydrogenase; DAPDH; Meso-DAP dehydrogenase; Meso-alpha,epsilon-diaminopimelate D-dehydrogenase; EC 1.4.1.16
PFams: DapB_N, DAPDH_C
326 amino acids: PaperBLAST, CDD, Compare to cluster