GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for asd (aspartate semi-aldehyde dehydrogenase) in L-methionine biosynthesis

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Definition of asd

Fetched 13 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 13 of these sequences

Found 3 clusters of similar sequences. Download as table or as draft rules or view by organism

Cluster 1 367-371 amino acids (not heteromeric)

C5BB06 aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
PFams: Semialdhyde_dh, Semialdhyde_dhC
367 amino acids: PaperBLAST, CDD, Compare to cluster

P44801 Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11
P44801 aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
PFams: Semialdhyde_dh, Semialdhyde_dhC
371 amino acids: PaperBLAST, CDD, Compare to cluster

Q9KQG2 Aspartate-semialdehyde dehydrogenase 1; ASA dehydrogenase 1; ASADH 1; Aspartate-beta-semialdehyde dehydrogenase 1; EC 1.2.1.11
Q9KQG2 aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
PFams: Semialdhyde_dh, Semialdhyde_dhC
370 amino acids: PaperBLAST, CDD, Compare to cluster

ASP-SEMIALDEHYDE-DEHYDROGENASE-MONOMER aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
P0A9Q9 Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11
CH_024631 aspartate-semialdehyde dehydrogenase
PFams: Semialdhyde_dh, Semialdhyde_dhC
367 amino acids: PaperBLAST, CDD, Compare to cluster

P0A1F8 Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11
PFams: Semialdhyde_dh, Semialdhyde_dhC
368 amino acids: PaperBLAST, CDD, Compare to cluster

Q51344 Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11
PFams: Semialdhyde_dh, Semialdhyde_dhC
370 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 354-365 amino acids (not heteromeric)

Q96YK1 Malonyl-CoA reductase; EC 1.2.1.75 (from HMM only)
Q96YK1 malonyl-CoA reductase (malonate semialdehyde-forming) (EC 1.2.1.75)
PFams: Semialdhyde_dh, Semialdhyde_dhC
359 amino acids: PaperBLAST, CDD, Compare to cluster

A4YEN2 Malonyl CoA reductase (NADP); NADP-dependent malonyl CoA reductase; EC 1.2.1.75 (from HMM only)
PFams: Semialdhyde_dh, Semialdhyde_dhC
357 amino acids: PaperBLAST, CDD, Compare to cluster

P13663 Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11
PFams: Semialdhyde_dh, Semialdhyde_dhC
365 amino acids: PaperBLAST, CDD, Compare to cluster

Q57658 Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11
PFams: Semialdhyde_dh, Semialdhyde_dhC
354 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 337-354 amino acids (not heteromeric)

P9WNX5 Aspartate-semialdehyde dehydrogenase; ASA dehydrogenase; ASADH; Aspartate-beta-semialdehyde dehydrogenase; EC 1.2.1.11
P9WNX5 aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
PFams: Semialdhyde_dh, Semialdhyde_dhC
345 amino acids: PaperBLAST, CDD, Compare to cluster

Q8KQ27 aspartate-semialdehyde dehydrogenase (EC 1.2.1.11)
PFams: Semialdhyde_dh, Semialdhyde_dhC
354 amino acids: PaperBLAST, CDD, Compare to cluster

P23247 Aspartate-semialdehyde dehydrogenase 2; ASA dehydrogenase 2; ASADH 2; Aspartate-beta-semialdehyde dehydrogenase 2; EC 1.2.1.11
PFams: Semialdhyde_dh, Semialdhyde_dhC
337 amino acids: PaperBLAST, CDD, Compare to cluster