GapMind for Amino acid biosynthesis


Clusters of Characterized Proteins

Clustering the characterized proteins for trpB (tryptophan synthase) in L-tryptophan biosynthesis

Or see other characterized proteins similar to trpB

Or see all steps for L-tryptophan biosynthesis

Or cluster curated proteins matching a keyword

Definition of trpB

Fetched 4 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 4 of these sequences

Found 2 clusters of similar sequences. Download as table or as draft rules or view by cluster

Candida albicans

CH_123254 likely tryptophan synthetase alpha chain (from HMM only) from Candida albicans
PFams: Trp_syntA, PALP
702 amino acids: PaperBLAST, CDD (Cluster 2)

Emericella nidulans

CH_122413 bifunctional tryptophan synthase TRPB (from HMM only) from Emericella nidulans
PFams: Trp_syntA, PALP
723 amino acids: PaperBLAST, CDD (Cluster 2)

Organism unknown

P50383 Tryptophan synthase beta chain 1; EC=
425 amino acids: PaperBLAST, CDD (Cluster 1)

Saccharolobus solfataricus

Q97TX6 tryptophan synthase (EC from Saccharolobus solfataricus
429 amino acids: PaperBLAST, CDD (Cluster 1)