GapMind for Amino acid biosynthesis

 

Clusters of Characterized Proteins

Clustering the characterized proteins for pre-dehydr (prephenate dehydrogenase) in L-tyrosine biosynthesis

Or see other characterized proteins similar to pre-dehydr

Or see all steps for L-tyrosine biosynthesis

Or cluster curated proteins matching a keyword

Definition of pre-dehydr

Fetched 17 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 11 of these sequences

Found 4 clusters of similar sequences. Another 5 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 287-368 amino acids (not heteromeric)

Q04983 Cyclohexadienyl dehydrogenase; Arogenate dehydrogenase; ADH; Prephenate dehydrogenase; PDH; EC 1.3.1.43; EC 1.3.1.12
PFams: 2-Hacid_dh_C, IlvN, F420_oxidored, NAD_binding_2, PDH
293 amino acids: PaperBLAST, CDD, Compare to cluster

J9XQS6 prephenate dehydrogenase (EC 1.3.1.12)
PFams: PDH
287 amino acids: PaperBLAST, CDD, Compare to cluster

O67636 prephenate dehydrogenase (EC 1.3.1.12)
PFams: NAD_binding_2, PDH
311 amino acids: PaperBLAST, CDD, Compare to cluster

Q8DUW0 prephenate dehydrogenase (EC 1.3.1.12)
PFams: F420_oxidored, NAD_binding_2, PDH
368 amino acids: PaperBLAST, CDD, Compare to cluster

O69721 Prephenate dehydrogenase; PDH; EC 1.3.1.12
PFams: F420_oxidored, PDH
323 amino acids: PaperBLAST, CDD, Compare to cluster

D8IR44_HERSS Prephenate dehydrogenase protein; EC=1.3.1.12
295 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 373-377 amino acids (not heteromeric)

P43902 prephenate dehydrogenase (EC 1.3.1.12)
PFams: CM_2, PDH
377 amino acids: PaperBLAST, CDD, Compare to cluster

CHORISMUTPREPHENDEHYDROG-MONOMER fused chorismate mutase/prephenate dehydrogenase (EC 5.4.99.5; EC 1.3.1.12)
PFams: CM_2, PDH
373 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 3 249-272 amino acids (not heteromeric)

D4GXG3 Prephenate dehydrogenase; EC=1.3.1.12
272 amino acids: PaperBLAST, CDD, Compare to cluster

A0A1L6J750 Prephenate dehydrogenase
249 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 4 431-452 amino acids (not heteromeric)

O60078 Probable prephenate dehydrogenase [NADP(+)]; PRDH; EC 1.3.1.13
CH_124806 prephenate dehydrogenase [NADP+] Tyr1 (predicted); EC 1.3.1.13
PFams: NAD_binding_2, F420_oxidored, PDH
431 amino acids: PaperBLAST, CDD, Compare to cluster

P20049 Prephenate dehydrogenase [NADP(+)]; PRDH; EC 1.3.1.13
PFams: NAD_binding_2, PDH
452 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/5 heteromeric)

A8AAX2 prephenate dehydrogenase (NADP+) (EC 1.3.1.13)
PFams: CM_2, Rossmann-like, F420_oxidored, NAD_binding_2, PDH
348 amino acids: PaperBLAST, CDD

O30012 prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); Chorismate mutase (EC 5.4.99.5)
PFams: PDH, CM_2, PDT, ACT
620 amino acids: PaperBLAST, CDD

Q72EV4_DESVH Prephenate dehydrogenase; EC=1.3.1.12
255 amino acids: PaperBLAST, CDD

Q8A0T8_BACTN Chorismate mutase/prephenate dehydratase (TyrA)
257 amino acids: PaperBLAST, CDD

MONOMER-18092 prephenate dehydrogenase (EC 1.3.1.12)
PFams: PDH
362 amino acids: PaperBLAST, CDD