PaperBLAST – Find papers about a protein or its homologs

 

Clusters of Characterized Proteins

Searching for 2.6.1.17 as complete word(s)

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Found 9 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 9 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 7 of these sequences

Found 2 clusters of similar sequences. Another 2 sequences are not clustered. Download as table or as draft rules or view by organism

Cluster 1 389-406 amino acids (not heteromeric)

b3359 N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli K-12 substr. MG1655
P18335 N-acetylornithine aminotransferase / N-succinyldiaminopimelate aminotransferase (EC 2.6.1.11; EC 2.6.1.17) from Escherichia coli (strain K12)
ARGD_ECOLI / P18335 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Escherichia coli (strain K12)
PFams: Aminotran_3, Aminotran_1_2
406 amino acids: PaperBLAST, CDD, Compare to cluster

ARGD_SALTY / P40732 Acetylornithine/succinyldiaminopimelate aminotransferase; ACOAT; DapATase; Succinyldiaminopimelate transferase; EC 2.6.1.11; EC 2.6.1.17 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
PFams: Aminotran_3, Aminotran_1_2
405 amino acids: PaperBLAST, CDD, Compare to cluster

HP15_3042 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Marinobacter adhaerens HP15
PFams: Aminotran_3
404 amino acids: PaperBLAST, CDD, Compare to cluster

AZOBR_RS19025 acetylornithine/N-succinyldiaminopimelate aminotransferase [EC:2.6.1.11 2.6.1.17] from Azospirillum brasilense Sp245
PFams: Aminotran_3
389 amino acids: PaperBLAST, CDD, Compare to cluster

Cluster 2 364-397 amino acids (not heteromeric)

Q82IK5 succinyldiaminopimelate transaminase (EC 2.6.1.17); glutamate-prephenate aminotransferase (EC 2.6.1.79) from Streptomyces avermitilis
PFams: Aminotran_1_2
364 amino acids: PaperBLAST, CDD, Compare to cluster

Q8NRE6 succinyldiaminopimelate transaminase (EC 2.6.1.17) from Corynebacterium glutamicum
PFams: Aminotran_1_2
367 amino acids: PaperBLAST, CDD, Compare to cluster

Q9ZEX3 succinyldiaminopimelate transaminase (EC 2.6.1.17) from Bordetella pertussis
PFams: Aminotran_1_2
397 amino acids: PaperBLAST, CDD, Compare to cluster

Singletons (0/2 heteromeric)

DAPC_MYCTU / P9WPZ5 Probable N-succinyldiaminopimelate aminotransferase DapC; DAP-AT; EC 2.6.1.17 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPZ5 succinyldiaminopimelate transaminase (EC 2.6.1.17) from Mycobacterium tuberculosis
PFams: Aminotran_1_2, Aminotran_5, DegT_DnrJ_EryC1, Cys_Met_Meta_PP
397 amino acids: PaperBLAST, CDD

b0907 phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli K-12 substr. MG1655
P23721 phosphoserine/phosphohydroxythreonine aminotransferase (EC 2.6.1.52; EC 2.6.1.17) from Escherichia coli (strain K12)
SERC_ECOLI / P23721 Phosphoserine aminotransferase; Phosphohydroxythreonine aminotransferase; PSAT; EC 2.6.1.52 from Escherichia coli (strain K12)
CH_002572 phosphoserine aminotransferase; EC 2.6.1.52 from Escherichia coli K12
PFams: Aminotran_5
362 amino acids: PaperBLAST, CDD