Clusters of Characterized Proteins

PaperBLAST – Find papers about a protein or its homologs

Clusters of Characterized Proteins

Searching for 4.3.1.2

Found 58 characterized proteins with matching descriptions. 0 of these are heteromeric.

Fetched 58 sequences

Running BLASTp

Found similarities, at above 30% identity and 75% coverage, for 55 of these sequences

Found 3 clusters of similar sequences. Another 3 sequences are not clustered. Download as table or as draft rules or view by cluster

Allium sativum

E3T9X0 phenylalanine ammonia-lyase (EC 4.3.1.24) from Allium sativum
PFams: Lyase_aromatic
708 amino acids: PaperBLAST, CDD (Cluster 1)

Arabidopsis thaliana

PAL1_ARATH / P35510 Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Arabidopsis thaliana (Mouse-ear cress)
P35510 phenylalanine ammonia-lyase (EC 4.3.1.24) from Arabidopsis thaliana
PFams: Lyase_aromatic
725 amino acids: PaperBLAST, CDD (Cluster 1)

PAL2_ARATH / P45724 Phenylalanine ammonia-lyase 2; EC 4.3.1.24 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Lyase_aromatic
717 amino acids: PaperBLAST, CDD (Cluster 1)

PAL3_ARATH / P45725 Phenylalanine ammonia-lyase 3; EC 4.3.1.24 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Lyase_aromatic
694 amino acids: PaperBLAST, CDD (Cluster 1)

PAL4_ARATH / Q9SS45 Phenylalanine ammonia-lyase 4; EC 4.3.1.24 from Arabidopsis thaliana (Mouse-ear cress)
PFams: Lyase_aromatic
707 amino acids: PaperBLAST, CDD (Cluster 1)

Astragalus mongholicus

Q52QH3 phenylalanine ammonia-lyase (EC 4.3.1.24) from Astragalus mongholicus
PFams: Lyase_aromatic
718 amino acids: PaperBLAST, CDD (Cluster 1)

Avena sativa

D0E576 phenylalanine ammonia-lyase (EC 4.3.1.24) from Avena sativa
PFams: Lyase_aromatic
691 amino acids: PaperBLAST, CDD (Cluster 1)

Bambusa oldhamii

C0LL35 phenylalanine ammonia-lyase (EC 4.3.1.24) from Bambusa oldhamii
PFams: Lyase_aromatic
713 amino acids: PaperBLAST, CDD (Cluster 1)

D5KS97 phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Bambusa oldhamii
PFams: Lyase_aromatic
701 amino acids: PaperBLAST, CDD (Cluster 1)

Q6ST23 phenylalanine ammonia-lyase (EC 4.3.1.24) from Bambusa oldhamii
PFams: Lyase_aromatic
712 amino acids: PaperBLAST, CDD (Cluster 1)

Brevibacillus laterosporus

H0UFN3 phenylalanine ammonia-lyase (EC 4.3.1.24) from Brevibacillus laterosporus
PFams: Lyase_aromatic
550 amino acids: PaperBLAST, CDD (Cluster 2)

Camellia sinensis

Q672H7 phenylalanine ammonia-lyase (EC 4.3.1.24) from Camellia sinensis
PFams: Lyase_aromatic
714 amino acids: PaperBLAST, CDD (Cluster 1)

Carboxydothermus hydrogenoformans

MAAL1_CARHZ / Q3AEU2 Methylaspartate ammonia-lyase 1; MAL; 3-methylaspartate ammonia-lyase 1; Beta-methylaspartase 1; EC 4.3.1.2 from Carboxydothermus hydrogenoformans (strain ATCC BAA-161 / DSM 6008 / Z-2901)
Q3AEU2 methylaspartate ammonia-lyase (EC 4.3.1.2) from Carboxydothermus hydrogenoformans
PFams: MAAL_N, MAAL_C, MR_MLE_C
420 amino acids: PaperBLAST, CDD (Cluster 3)

Chondromyces crocatus

TAM_CHOCO / Q0VZ68 Tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Chondromyces crocatus
Q0VZ68 tyrosine 2,3-aminomutase (EC 5.4.3.6) from Chondromyces crocatus
PFams: Lyase_aromatic
531 amino acids: PaperBLAST, CDD (Cluster 2)

Cistanche deserticola

D3Y5L6 phenylalanine ammonia-lyase (EC 4.3.1.24) from Cistanche deserticola
PFams: Lyase_aromatic
709 amino acids: PaperBLAST, CDD (Cluster 1)

Citrobacter amalonaticus

MAAL_CITAM / O66145 Methylaspartate ammonia-lyase; MAL; 3-methylaspartate ammonia-lyase; Beta-methylaspartase; EC 4.3.1.2 from Citrobacter amalonaticus
PFams: MAAL_N, MAAL_C, MR_MLE_C
413 amino acids: PaperBLAST, CDD (Cluster 3)

Clostridium tetanomorphum

Q05514 methylaspartase subunit (EC 4.3.1.2) from Clostridium tetanomorphum
MAAL_CLOTT / Q05514 Methylaspartate ammonia-lyase; MAL; 3-methylaspartase ammonia-lyase; Beta-methylaspartase; EC 4.3.1.2 from Clostridium tetanomorphum
Q05514 methylaspartate ammonia-lyase (EC 4.3.1.2) from Clostridium tetanomorphum
PFams: MAAL_N, MR_MLE_N, MAAL_C
413 amino acids: PaperBLAST, CDD (Cluster 3)

Cupriavidus metallidurans

TALY_CUPMC / Q1LRV9 Tyrosine ammonia-lyase; CmTAL; Tyrosine 2,3-aminomutase; EC 4.3.1.23; EC 5.4.3.6 from Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 / CH34) (Ralstonia metallidurans)
PFams: Lyase_aromatic
533 amino acids: PaperBLAST, CDD (Cluster 2)

Cynara cardunculus

B1GS31 phenylalanine ammonia-lyase (EC 4.3.1.24) from Cynara cardunculus var. scolymus
PFams: Lyase_aromatic
713 amino acids: PaperBLAST, CDD (Cluster 1)

Daucus carota

Q852S1 phenylalanine ammonia-lyase (EC 4.3.1.24) from Daucus carota
PFams: Lyase_aromatic
715 amino acids: PaperBLAST, CDD (Cluster 1)

Delftia (strain

B2DFG5 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.27) from Delftia sp. (strain HT23)
DTHAD_DELSH / B2DFG5 D-threo-3-hydroxyaspartate dehydratase; D-THA DH; D-THA dehydratase; Threo-3-hydroxy-D-aspartate ammonia-lyase; EC 4.3.1.27 from Delftia sp. (strain HT23)
B2DFG5 threo-3-hydroxy-D-aspartate ammonia-lyase (EC 4.3.1.27) from Delftia sp. HT23
PFams: Ala_racemase_N, D-ser_dehydrat
380 amino acids: PaperBLAST, CDD (Singleton 2)

Delftia HT23

Dictyostelium discoideum

HUTH_DICDI / Q54JI7 Probable histidine ammonia-lyase; Histidase; EC 4.3.1.3 from Dictyostelium discoideum (Slime mold)
Q54JI7 phenylalanine ammonia-lyase (EC 4.3.1.24) from Dictyostelium discoideum
PFams: Lyase_aromatic
539 amino acids: PaperBLAST, CDD (Cluster 2)

Ephedra sinica

B5U983 phenylalanine ammonia-lyase (EC 4.3.1.24) from Ephedra sinica
PFams: Lyase_aromatic
722 amino acids: PaperBLAST, CDD (Cluster 1)

Fragaria x

F8RL28 phenylalanine ammonia-lyase (EC 4.3.1.24) from Fragaria x ananassa
PFams: Lyase_aromatic
720 amino acids: PaperBLAST, CDD (Cluster 1)

Haloarcula marismortui

Q5V465 methylaspartate ammonia-lyase (EC 4.3.1.2) from Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
PFams: MAAL_N, MAAL_C, MR_MLE_C
422 amino acids: PaperBLAST, CDD (Cluster 3)

Jatropha curcas

Q0GA81 phenylalanine ammonia-lyase (EC 4.3.1.24) from Jatropha curcas
PFams: Lyase_aromatic
713 amino acids: PaperBLAST, CDD (Cluster 1)

Lycoris radiata

B9VU66 phenylalanine ammonia-lyase (EC 4.3.1.24) from Lycoris radiata
PFams: Lyase_aromatic
708 amino acids: PaperBLAST, CDD (Cluster 1)

Myxococcus (strain

TAM_MYXSM / B8ZV94 Tyrosine 2,3-aminomutase; MxTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus sp. (strain Mx-B0)
B8ZV94 tyrosine 2,3-aminomutase (EC 5.4.3.6) from Myxococcus sp. Mx-B0
PFams: Lyase_aromatic
526 amino acids: PaperBLAST, CDD (Cluster 2)

Myxococcus Mx-B0

Myxococcus fulvus

TAM_MYXFU / B8ZV93 Tyrosine 2,3-aminomutase; MfTAM; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Myxococcus fulvus
B8ZV93 tyrosine 2,3-aminomutase (EC 5.4.3.6) from Myxococcus fulvus Mx f65
PFams: Lyase_aromatic
526 amino acids: PaperBLAST, CDD (Cluster 2)

Nicotiana tabacum

C6ZIA5 phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum
PFams: Lyase_aromatic
717 amino acids: PaperBLAST, CDD (Cluster 1)

PAL1_TOBAC / P25872 Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nicotiana tabacum (Common tobacco)
P25872 phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum
PFams: Lyase_aromatic
715 amino acids: PaperBLAST, CDD (Cluster 1)

P35513 phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum
PFams: Lyase_aromatic
712 amino acids: PaperBLAST, CDD (Cluster 1)

P45733 phenylalanine ammonia-lyase (EC 4.3.1.24) from Nicotiana tabacum
PFams: Lyase_aromatic
712 amino acids: PaperBLAST, CDD (Cluster 1)

Nostoc punctiforme

PAL_NOSP7 / B2J528 Phenylalanine ammonia-lyase; EC 4.3.1.24 from Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
PFams: Lyase_aromatic
569 amino acids: PaperBLAST, CDD (Cluster 2)

Petroselinum crispum

PAL1_PETCR / P24481 Phenylalanine ammonia-lyase 1; EC 4.3.1.24 from Petroselinum crispum (Parsley) (Petroselinum hortense)
P24481 phenylalanine ammonia-lyase (EC 4.3.1.24) from Petroselinum crispum
PFams: Lyase_aromatic
716 amino acids: PaperBLAST, CDD (Cluster 1)

Phoma (strain

MFM7_PHOSM / A0A3G1DJK5 Phenylalanine ammonia-lyase; PAL; Squalestatin S1 biosynthesis cluster protein M7; EC 4.3.1.24 from Phoma sp. (strain ATCC 20986 / MF5453)
PFams: Lyase_aromatic
729 amino acids: PaperBLAST, CDD (Cluster 1)

Pinus taeda

P52777 phenylalanine ammonia-lyase (EC 4.3.1.24) from Pinus taeda
PFams: Lyase_aromatic
754 amino acids: PaperBLAST, CDD (Cluster 1)

Plectranthus scutellarioides

L0BXX7 phenylalanine ammonia-lyase (EC 4.3.1.24) from Plectranthus scutellarioides
PFams: Lyase_aromatic
711 amino acids: PaperBLAST, CDD (Cluster 1)

Rhodiola sachalinensis

Q5EIB6 phenylalanine ammonia-lyase (EC 4.3.1.24) from Rhodiola sachalinensis
PFams: Lyase_aromatic
710 amino acids: PaperBLAST, CDD (Cluster 1)

Rhodobacteraeroides

TALY_RHOS4 / Q3IWB0 Tyrosine ammonia-lyase; EC 4.3.1.23 from Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
Q3IWB0 tyrosine ammonia-lyase (EC 4.3.1.23) from Rhodobacter sphaeroides
PFams: Lyase_aromatic
523 amino acids: PaperBLAST, CDD (Cluster 2)

Rhodobacteraeroides (strain

Rhodosporidium toruloides

PALY_RHOTO / P11544 Phenylalanine/tyrosine ammonia-lyase; Bifunctional phenylalanine ammonia-lyase; Bifunctional PAL; EC 4.3.1.25 from Rhodosporidium toruloides (Yeast) (Rhodotorula gracilis)
P11544 phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Rhodotorula toruloides
PFams: Lyase_aromatic
716 amino acids: PaperBLAST, CDD (Cluster 1)

Rhodotorula glutinis

U5TV35 tyrosine ammonia-lyase (EC 4.3.1.23) from Rhodotorula glutinis
PFams: Lyase_aromatic
693 amino acids: PaperBLAST, CDD (Cluster 1)

Rhodotorula toruloides

Rubinisphaera brasiliensis

F0SIS6 phenylalanine ammonia-lyase (EC 4.3.1.24) from Rubinisphaera brasiliensis
PFams: Lyase_aromatic
550 amino acids: PaperBLAST, CDD (Cluster 2)

Salmonella enterica

D0ZLR3 D-glucosaminate 6-phosphate ammonia-lyase (EC 4.3.1.29) from Salmonella typhimurium (strain 14028s / SGSC 2262)
DGAE_SALT1 / D0ZLR3 D-glucosaminate-6-phosphate ammonia lyase; Glucosaminate-6-phosphate dehydratase; EC 4.3.1.29 from Salmonella typhimurium (strain 14028s / SGSC 2262)
D0ZLR3 D-glucosaminate-6-phosphate ammonia-lyase (EC 4.3.1.29) from Salmonella enterica subsp. enterica serovar Typhimurium
PFams: SelA
369 amino acids: PaperBLAST, CDD (Singleton 1)

Salmonella typhimurium

Salvia miltiorrhiza

A9XIW5 phenylalanine ammonia-lyase (EC 4.3.1.24) from Salvia miltiorrhiza
PFams: Lyase_aromatic
711 amino acids: PaperBLAST, CDD (Cluster 1)

Solanum lycopersicum

P35511 phenylalanine ammonia-lyase (EC 4.3.1.24) from Solanum lycopersicum
PFams: Lyase_aromatic
704 amino acids: PaperBLAST, CDD (Cluster 1)

Sorghum bicolor

C5XXT8 phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Sorghum bicolor
PFams: Lyase_aromatic
704 amino acids: PaperBLAST, CDD (Cluster 1)

C5XXT9 phenylalanine ammonia-lyase (EC 4.3.1.24) from Sorghum bicolor
PFams: Lyase_aromatic
718 amino acids: PaperBLAST, CDD (Cluster 1)

C5YCD6 phenylalanine/tyrosine ammonia-lyase (EC 4.3.1.25) from Sorghum bicolor
PFams: Lyase_aromatic
703 amino acids: PaperBLAST, CDD (Cluster 1)

Streptomyces globisporus

TAM_STRGL / Q8GMG0 MIO-dependent tyrosine 2,3-aminomutase; Tyrosine ammonia-lyase; EC 5.4.3.6; EC 4.3.1.23 from Streptomyces globisporus
PFams: Lyase_aromatic
539 amino acids: PaperBLAST, CDD (Cluster 1)

Streptomyces maritimus

Q9KHJ9 phenylalanine ammonia lyase (EC 4.3.1.25) from Streptomyces maritimus
Q9KHJ9 phenylalanine aminomutase (D-beta-phenylalanine forming) (EC 5.4.3.11) from Streptomyces maritimus
PFams: Lyase_aromatic
523 amino acids: PaperBLAST, CDD (Cluster 2)

Streptomyces rapamycinicus

Q54304 L-lysine cyclodeaminase (EC 4.3.1.28) from Streptomyces rapamycinicus (strain ATCC 29253 / DSM 41530 / NRRL 5491 / AYB-994)
RAPL_STRRN / Q54304 L-lysine cyclodeaminase; Rapamycin biosynthesis protein L; EC 4.3.1.28 from Streptomyces rapamycinicus (strain ATCC 29253 / DSM 41530 / NRRL 5491 / AYB-994) (Streptomyces hygroscopicus (strain ATCC 29253))
PFams: OCD_Mu_crystall
343 amino acids: PaperBLAST, CDD (Singleton 3)

Taxus canadensis

Q6GZ04 phenylalanine aminomutase (EC 5.4.3.10) from Taxus canadensis
PAM_TAXCA / Q6GZ04 Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus canadensis (Canadian yew)
Q6GZ04 phenylalanine aminomutase (L-beta-phenylalanine forming) (EC 5.4.3.10) from Taxus canadensis
PFams: Lyase_aromatic
698 amino acids: PaperBLAST, CDD (Cluster 1)

Taxus wallichiana

Q68G83 phenylalanine ammonia-lyase (EC 4.3.1.24); phenylalanine aminomutase (L-beta-phenylalanine forming) (EC 5.4.3.10) from Taxus wallichiana var. chinensis
PFams: Lyase_aromatic
687 amino acids: PaperBLAST, CDD (Cluster 1)

Q68G84 phenylalanine aminomutase (EC 5.4.3.10) from Taxus wallichiana var. chinensis
PAM_TAXWC / Q68G84 Phenylalanine aminomutase (L-beta-phenylalanine forming); Phenylalanine ammonia-lyase; EC 5.4.3.10; EC 4.3.1.24 from Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis)
Q68G84 phenylalanine aminomutase (L-beta-phenylalanine forming) (EC 5.4.3.10); phenylalanine aminomutase (D-beta-phenylalanine forming) (EC 5.4.3.11) from Taxus wallichiana var. chinensis
PFams: Lyase_aromatic
687 amino acids: PaperBLAST, CDD (Cluster 1)

Trichormus variabilis

PAL_TRIV2 / Q3M5Z3 Phenylalanine ammonia-lyase; EC 4.3.1.24 from Trichormus variabilis (strain ATCC 29413 / PCC 7937) (Anabaena variabilis)
Q3M5Z3 phenylalanine ammonia-lyase (EC 4.3.1.24) from Trichormus variabilis
PFams: Lyase_aromatic
567 amino acids: PaperBLAST, CDD (Cluster 2)

Zea mays

C0HJ40 phenylalanine ammonia-lyase (EC 4.3.1.24) from Zea mays
PFams: Lyase_aromatic
715 amino acids: PaperBLAST, CDD (Cluster 1)

PALY_MAIZE / Q8VXG7 Phenylalanine/tyrosine ammonia-lyase; Bifunctional phenylalanine ammonia-lyase; Bifunctional PAL; EC 4.3.1.25 from Zea mays (Maize)
Q8VXG7 phenylalanine ammonia-lyase (EC 4.3.1.24) from Zea mays
PFams: Lyase_aromatic
703 amino acids: PaperBLAST, CDD (Cluster 1)